Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   OTU47_RS11265 Genome accession   NZ_CP113115
Coordinates   2152678..2152944 (-) Length   88 a.a.
NCBI ID   WP_001808618.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain NP2     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2147678..2157944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OTU47_RS11255 (OTU47_11255) metF 2149238..2150104 (-) 867 WP_000089965.1 methylenetetrahydrofolate reductase [NAD(P)H] -
  OTU47_RS11260 (OTU47_11260) metE 2150168..2152417 (-) 2250 WP_050280916.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  OTU47_RS11265 (OTU47_11265) HI0659 2152678..2152944 (-) 267 WP_001808618.1 helix-turn-helix domain-containing protein Machinery gene
  OTU47_RS11270 (OTU47_11270) - 2153070..2153517 (-) 448 Protein_2188 transposase -
  OTU47_RS11275 (OTU47_11275) - 2153673..2154674 (+) 1002 WP_050280917.1 endonuclease/exonuclease/phosphatase family protein -
  OTU47_RS11280 (OTU47_11280) pheT 2154742..2157147 (-) 2406 WP_050280918.1 phenylalanine--tRNA ligase subunit beta -
  OTU47_RS11285 (OTU47_11285) - 2157224..2157733 (-) 510 WP_000619941.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9622.15 Da        Isoelectric Point: 4.4893

>NTDB_id=689849 OTU47_RS11265 WP_001808618.1 2152678..2152944(-) (HI0659) [Streptococcus pneumoniae strain NP2]
MEGCPSELFSKEEILESDMRVAIMSELIEARYEQGISQKKLEEVSGISQPVIARMETGKTSPQLDTVLKVLASLGKTLAI
VPLEQGKS

Nucleotide


Download         Length: 267 bp        

>NTDB_id=689849 OTU47_RS11265 WP_001808618.1 2152678..2152944(-) (HI0659) [Streptococcus pneumoniae strain NP2]
TTGGAAGGATGTCCATCTGAGCTCTTTAGCAAGGAGGAAATCCTTGAAAGTGATATGCGAGTGGCTATCATGAGCGAGTT
GATTGAGGCTAGGTATGAACAAGGAATCAGTCAGAAAAAGCTGGAAGAAGTCAGTGGAATAAGCCAGCCTGTCATAGCTA
GGATGGAGACAGGAAAGACTAGTCCTCAGTTGGATACAGTTTTAAAAGTCCTAGCCAGTTTAGGAAAGACACTAGCAATC
GTCCCACTTGAACAGGGAAAAAGTTGA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(29-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

61.039

87.5

0.534