Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   OTU47_RS08675 Genome accession   NZ_CP113115
Coordinates   1641447..1643114 (-) Length   555 a.a.
NCBI ID   WP_138022600.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain NP2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1636447..1648114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OTU47_RS08650 (OTU47_08650) - 1636730..1637532 (-) 803 Protein_1668 IS5 family transposase -
  OTU47_RS08655 (OTU47_08655) - 1637540..1637842 (-) 303 WP_000590566.1 PTS sugar transporter subunit IIB -
  OTU47_RS08660 (OTU47_08660) - 1637880..1638356 (-) 477 WP_000242204.1 PTS sugar transporter subunit IIA -
  OTU47_RS08665 (OTU47_08665) lepA 1638815..1640638 (-) 1824 WP_001047204.1 translation elongation factor 4 -
  OTU47_RS08670 (OTU47_08670) - 1640717..1641445 (-) 729 WP_000133343.1 metallophosphoesterase family protein -
  OTU47_RS08675 (OTU47_08675) recN 1641447..1643114 (-) 1668 WP_138022600.1 DNA repair protein RecN Machinery gene
  OTU47_RS08680 (OTU47_08680) - 1643121..1643552 (-) 432 WP_050089280.1 arginine repressor -
  OTU47_RS08685 (OTU47_08685) - 1643545..1644360 (-) 816 WP_001041069.1 TlyA family RNA methyltransferase -
  OTU47_RS08690 (OTU47_08690) - 1644353..1645228 (-) 876 WP_000743830.1 polyprenyl synthetase family protein -
  OTU47_RS08695 (OTU47_08695) - 1645225..1645437 (-) 213 WP_000043230.1 exodeoxyribonuclease VII small subunit -
  OTU47_RS08700 (OTU47_08700) xseA 1645415..1646755 (-) 1341 WP_000417461.1 exodeoxyribonuclease VII large subunit -
  OTU47_RS08705 (OTU47_08705) udk 1646883..1647521 (-) 639 WP_001181378.1 uridine kinase -
  OTU47_RS08710 (OTU47_08710) - 1647629..1647931 (-) 303 WP_000985089.1 bacteriocin immunity protein -

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 62848.28 Da        Isoelectric Point: 4.6232

>NTDB_id=689828 OTU47_RS08675 WP_138022600.1 1641447..1643114(-) (recN) [Streptococcus pneumoniae strain NP2]
MLLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGARATTDVIRHGAPKAEIEGLFSVENSRLLQEIF
DEQGLELGDEIIIRREILQNGRSISRVNGQMVNLSVLRTIGQHLVDIHGQHDHEELMRPQLHIQMLDEFGDAAFWDLKET
YQTSFDAYRKMRKQVLEVKKNQQEHKARIEMLEFQMAEIEAANLQAGEDLALNQERDKLLNHKNIADTLTNAYSMLDNED
FSSLANVRSAMNDMESVEEYDPEYREISSSLSETYYVLEDISKRLEAIIEDLDFDGNRLMQVENRLDLLHTITRKYGGTV
DDVLLYFAKITEEYNLLTGNNLSSEDMEAELKKLEVNLVNLAGQLASARHNLAQQLEAEIKQELQDLYMEKAQFQVRFSK
GKFSREGNEMVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFSRKEGKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
QYGQVLAISHLPQVIAIADYQFFIEKISNDHSTVSTVRLLTVEERVEEVAKMLAGDDVTEAALTQARELLRNREK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=689828 OTU47_RS08675 WP_138022600.1 1641447..1643114(-) (recN) [Streptococcus pneumoniae strain NP2]
ATGTTACTTGAAATTTCGATAAAAAACTTTGCCATTATTGAGGCTATTTCCCTCAATTTTGAAAAGGGGATGACTGTCCT
GACTGGTGAAACGGGTGCAGGGAAGTCGATTATCATTGATGCCATGAATATGATGTTGGGAGCTCGTGCGACGACAGATG
TTATTCGTCATGGTGCACCAAAGGCAGAGATTGAAGGGCTTTTCTCAGTTGAGAATAGTCGTCTTTTACAGGAAATTTTT
GATGAGCAAGGTTTAGAATTAGGTGATGAAATTATCATCCGTCGGGAAATCTTGCAAAATGGTCGTAGTATCAGCCGTGT
AAATGGTCAGATGGTTAATCTGTCTGTTTTGCGAACTATTGGGCAACATCTTGTAGATATTCATGGTCAGCATGACCATG
AGGAGTTAATGCGTCCCCAACTGCATATCCAGATGTTGGATGAATTTGGTGATGCCGCTTTTTGGGACTTGAAAGAAACC
TATCAAACGAGTTTTGATGCCTATCGGAAAATGCGCAAGCAGGTTCTGGAAGTCAAGAAAAACCAACAGGAACACAAGGC
ACGTATCGAAATGTTGGAATTTCAAATGGCAGAGATTGAGGCAGCAAACTTGCAGGCTGGAGAAGACTTGGCTCTCAATC
AAGAGCGAGATAAACTCCTCAACCACAAAAATATTGCGGATACACTGACCAATGCCTACAGTATGTTGGACAATGAAGAT
TTTTCAAGTCTGGCCAATGTTCGTTCAGCCATGAATGACATGGAAAGTGTCGAAGAGTATGACCCTGAATACCGTGAAAT
TTCAAGCTCTCTGTCTGAGACCTACTATGTTTTAGAAGACATTAGCAAACGTTTGGAAGCTATCATTGAGGACCTTGATT
TTGATGGCAATCGCCTCATGCAGGTTGAGAATCGTTTGGACCTCCTTCATACTATTACTCGTAAGTATGGTGGGACTGTT
GATGATGTTTTGCTTTATTTTGCCAAGATTACGGAAGAATACAATCTCTTGACAGGCAATAATCTTTCGTCTGAGGACAT
GGAAGCAGAGCTTAAGAAGTTGGAAGTCAATCTTGTCAATTTGGCAGGTCAACTTGCTTCTGCTCGTCATAATTTGGCTC
AGCAACTCGAAGCTGAGATTAAACAAGAACTGCAAGATCTTTATATGGAAAAAGCCCAGTTTCAGGTTCGTTTTAGTAAG
GGAAAATTCAGTCGTGAGGGAAATGAAATGGTTGAGTTTTATATTTCAACCAACCCTGGAGAAGACTTTAAACCCTTGGT
TAAGGTTGCTTCTGGAGGGGAATTATCTCGTCTCATGTTAGCCATTAAGTCTGCCTTTTCACGTAAAGAAGGCAAGACTA
GCATTGTCTTTGATGAAGTGGATACGGGAGTTTCAGGTCGTGTTGCTCAAGCTATTGCTCAGAAAATTCATAAAATTGGT
CAGTATGGTCAGGTTTTGGCTATCTCCCATTTGCCACAAGTAATTGCGATTGCAGATTATCAATTCTTTATTGAGAAGAT
TAGTAATGACCATTCAACGGTTTCGACTGTTCGTCTCTTGACAGTCGAAGAGCGAGTGGAGGAAGTTGCCAAGATGTTGG
CAGGTGATGATGTGACAGAAGCAGCCCTGACGCAAGCCAGAGAATTGTTGAGAAACAGGGAGAAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

42.958

100

0.44