Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutX   Type   Machinery gene
Locus tag   OTU47_RS08535 Genome accession   NZ_CP113115
Coordinates   1611879..1612343 (-) Length   154 a.a.
NCBI ID   WP_001135754.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain NP2     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1606879..1617343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OTU47_RS08515 (OTU47_08515) - 1607830..1608798 (-) 969 WP_000105360.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -
  OTU47_RS08520 (OTU47_08520) pdrM 1608952..1610313 (-) 1362 WP_000278524.1 sodium-coupled multidrug efflux MATE transporter PdrM -
  OTU47_RS08525 (OTU47_08525) - 1610324..1610584 (-) 261 WP_001105925.1 hypothetical protein -
  OTU47_RS08530 (OTU47_08530) - 1610598..1611866 (-) 1269 WP_000924502.1 dihydroorotase -
  OTU47_RS08535 (OTU47_08535) mutX 1611879..1612343 (-) 465 WP_001135754.1 NUDIX hydrolase Machinery gene
  OTU47_RS08540 (OTU47_08540) - 1612353..1613006 (-) 654 WP_000401328.1 uracil-DNA glycosylase -
  OTU47_RS08545 (OTU47_08545) - 1613142..1613744 (-) 603 WP_001826570.1 hypothetical protein -
  OTU47_RS08550 (OTU47_08550) - 1613802..1614515 (-) 714 WP_000499429.1 YjjG family noncanonical pyrimidine nucleotidase -
  OTU47_RS08555 (OTU47_08555) - 1614924..1615142 (-) 219 Protein_1648 PTS mannose family transporter subunit IIA -
  OTU47_RS12020 - 1615142..1615216 (-) 75 Protein_1649 dihydroxyacetone kinase subunit L -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17854.24 Da        Isoelectric Point: 4.2287

>NTDB_id=689827 OTU47_RS08535 WP_001135754.1 1611879..1612343(-) (mutX) [Streptococcus pneumoniae strain NP2]
MPQLATICYIDNGKELLMLHRNKKPNDIHEGKWIGVGGKLERGETPQECAVREILEETGLKAKPVLKGVITFPEFTPDLD
WYTYVFKVTEFEGDLIDCNEGTLEWVPYDEVLSKPTWEGDHTFVEWLLEDKPFFSAKFVYDGDKLLDTQVDFYE

Nucleotide


Download         Length: 465 bp        

>NTDB_id=689827 OTU47_RS08535 WP_001135754.1 1611879..1612343(-) (mutX) [Streptococcus pneumoniae strain NP2]
ATGCCTCAGTTAGCGACGATTTGTTACATTGATAATGGGAAAGAACTGCTCATGCTCCATCGTAATAAGAAACCCAATGA
TATCCATGAAGGGAAATGGATTGGTGTGGGTGGTAAGCTAGAGAGAGGAGAGACGCCCCAGGAATGCGCGGTACGTGAAA
TCCTTGAAGAAACAGGGCTCAAAGCCAAGCCAGTTCTAAAAGGTGTCATCACTTTTCCTGAATTTACACCAGATTTAGAC
TGGTACACCTATGTTTTTAAGGTGACGGAGTTTGAGGGCGACTTGATTGACTGCAATGAGGGGACGCTAGAATGGGTTCC
CTATGACGAGGTTTTGAGCAAGCCGACTTGGGAAGGTGACCACACCTTTGTTGAGTGGCTTTTAGAGGATAAACCCTTCT
TTTCAGCCAAGTTTGTTTATGATGGGGATAAATTGTTGGATACCCAAGTTGATTTCTATGAATAA

Domains

Predicted by InterProScan.

NUDIX domain (NUDIX)

(2-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutX Streptococcus pneumoniae R6

98.701

100

0.987