Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   OTU47_RS02105 Genome accession   NZ_CP113115
Coordinates   412100..412870 (-) Length   256 a.a.
NCBI ID   WP_000616157.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain NP2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 407100..417870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OTU47_RS02075 (OTU47_02075) - 408192..409538 (-) 1347 WP_001826500.1 IS1380-like element ISSpn5 family transposase -
  OTU47_RS02080 (OTU47_02080) - 409975..410100 (-) 126 WP_000346297.1 PncF family bacteriocin immunity protein -
  OTU47_RS02085 (OTU47_02085) blpU 410103..410333 (-) 231 WP_001093076.1 bacteriocin-like peptide BlpU -
  OTU47_RS02090 (OTU47_02090) - 410536..410835 (-) 300 Protein_416 transposase family protein -
  OTU47_RS02095 (OTU47_02095) - 410872..411105 (-) 234 WP_000136447.1 acyl carrier protein -
  OTU47_RS02100 (OTU47_02100) plsX 411111..412103 (-) 993 WP_000717456.1 phosphate acyltransferase PlsX -
  OTU47_RS02105 (OTU47_02105) recO 412100..412870 (-) 771 WP_000616157.1 DNA repair protein RecO Machinery gene
  OTU47_RS02110 (OTU47_02110) - 412867..414036 (-) 1170 WP_000366343.1 pyridoxal phosphate-dependent aminotransferase -
  OTU47_RS02115 (OTU47_02115) - 414185..415195 (+) 1011 WP_000009157.1 YeiH family protein -
  OTU47_RS02120 (OTU47_02120) - 415378..415815 (-) 438 WP_000076479.1 CoA-binding protein -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29735.24 Da        Isoelectric Point: 5.1580

>NTDB_id=689755 OTU47_RS02105 WP_000616157.1 412100..412870(-) (recO) [Streptococcus pneumoniae strain NP2]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQVGKCMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELMEAGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRVG
QAFDFSFKYGACLCPEHYHEDERRCHLNPNIPYLLNQFQAIDFETLETISLKPGIKQELRQFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEKK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=689755 OTU47_RS02105 WP_000616157.1 412100..412870(-) (recO) [Streptococcus pneumoniae strain NP2]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTTTACAATCGCAATTTTCGTGAGGATGACAAGCTTGTCAAAATTTT
TACAGAGCAGGTTGGCAAATGCATGTTTTTTGTCAAACACGCTGGTCAGTCTAAGCTGGCGCCTGTTATTCAGCCCTTGG
TGCTGGCACGATTTCTCTTGCGAATCAATGATGACGGACTCAGTTACATCGAAGACTATCATGAGGTCATGACTTTTCCC
AAGATTAATAGTGACCTCTTTGTCATGGCCTATGCGACCTATGTGGCAGCTCTTGCAGATGCTAGTTTGCAGGACAATCA
GCAGGATGCTCCCTTGTTTGCTTTTTTGCAAAAGACTTTGGAGTTGATGGAAGCAGGCTTGGATTATCAGGTTTTGACCA
ATATTTTTGAAATTCAAATTTTGACTCGATTTGGAATCAGCCTCAATTTTAATGAGTGTGTCTTCTGCCATCGGGTTGGT
CAGGCTTTTGACTTTTCTTTCAAATATGGAGCCTGTCTCTGTCCAGAGCATTATCATGAGGATGAGAGACGTTGCCATCT
CAATCCCAATATCCCCTATCTGCTCAATCAATTTCAAGCTATTGATTTTGAGACTTTGGAGACCATTTCGCTCAAGCCTG
GAATCAAGCAAGAGCTACGCCAATTTATGGATCAACTATATGAAGAGTACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAAAGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(4-72)

Recombination protein O C terminal (RecO_C)

(84-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

99.219

100

0.992