Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   LNQ82_RS04615 Genome accession   NZ_CP097501
Coordinates   939764..941263 (-) Length   499 a.a.
NCBI ID   WP_420838888.1    Uniprot ID   -
Organism   Conchiformibius steedae DSM 2580     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 934764..946263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LNQ82_RS04600 (LNQ82_04600) - 935681..936073 (-) 393 WP_051532116.1 endonuclease V -
  LNQ82_RS04605 (LNQ82_04605) uvrC 936101..937924 (+) 1824 WP_027022345.1 excinuclease ABC subunit UvrC -
  LNQ82_RS04610 (LNQ82_04610) dnaJ 938581..939726 (+) 1146 WP_027022347.1 molecular chaperone DnaJ -
  LNQ82_RS04615 (LNQ82_04615) pilA 939764..941263 (-) 1500 WP_420838888.1 signal recognition particle-docking protein FtsY Machinery gene
  LNQ82_RS04620 (LNQ82_04620) - 942028..942978 (-) 951 WP_027022349.1 ABC transporter ATP-binding protein -
  LNQ82_RS04625 (LNQ82_04625) guaB 943051..944514 (-) 1464 WP_027022350.1 IMP dehydrogenase -
  LNQ82_RS04630 (LNQ82_04630) - 944665..945084 (+) 420 WP_051532117.1 DUF4124 domain-containing protein -
  LNQ82_RS04635 (LNQ82_04635) rpmE 945175..945399 (+) 225 WP_027022352.1 50S ribosomal protein L31 -
  LNQ82_RS04640 (LNQ82_04640) rplQ 945490..945873 (-) 384 WP_027022353.1 50S ribosomal protein L17 -

Sequence

Protein


Download         Length: 499 a.a.        Molecular weight: 53276.27 Da        Isoelectric Point: 3.9620

>NTDB_id=689747 LNQ82_RS04615 WP_420838888.1 939764..941263(-) (pilA) [Conchiformibius steedae DSM 2580]
MLEETPAAAPAEASEEMLDADAIKAAVQAMQQESGETIFEFTEDGDAEQTASEQTNGEAAFSIDVVDLYADDEQQMQEQI
PPLLQADTETVDAGEIEAEMLAMEEAANGPPIEPPLPETKQSSLQEKTNEPAESTPVAEVEAASAEESSAESAEPKDCSV
SQEETVTAEETASAETNEAETATTVTEEETPQKTGGWAARLKEGLSKSRNHMAKSLASVFGGGQIDEDLYEELETVLLTS
DMGIEATEKLMDEVRRRVSLSGLKDGNELRQTLKEAVRDLLSPLEQPLAIPEGQGPFVIMMAGINGAGKTTSIGKLAKYF
QAQGKSVLLAAGDTFRAAAREQLQEWGRRNGVTVISQESADSAAVCFDALEAAKARKIDIVLADTAGRLPTQLHLMEEIK
KVKRVLQKAIPDAPHEVMVVLDANIGQNAVNQVAAFDEALGVTGLVVTKLDGTAKGGVLAALAERGIPVRFIGVGEKIDD
LRPFDTEAFVEALFEDEQA

Nucleotide


Download         Length: 1500 bp        

>NTDB_id=689747 LNQ82_RS04615 WP_420838888.1 939764..941263(-) (pilA) [Conchiformibius steedae DSM 2580]
ATGCTGGAAGAAACCCCCGCTGCCGCGCCTGCCGAAGCCTCGGAAGAAATGTTGGATGCCGATGCCATCAAAGCCGCCGT
ACAAGCCATGCAGCAGGAATCGGGCGAAACCATTTTTGAGTTTACCGAAGACGGCGATGCGGAACAAACAGCATCAGAGC
AAACAAACGGCGAGGCAGCGTTTTCTATTGACGTAGTGGATTTGTATGCCGACGATGAGCAGCAGATGCAAGAACAGATT
CCGCCGCTGTTACAAGCCGATACCGAAACCGTAGATGCGGGCGAAATTGAAGCCGAAATGCTGGCGATGGAAGAAGCAGC
AAACGGTCCGCCGATTGAACCACCGCTGCCCGAAACCAAACAATCATCGCTTCAAGAAAAAACCAATGAACCAGCGGAAA
GCACGCCTGTAGCGGAAGTTGAAGCCGCATCAGCGGAAGAGTCAAGCGCCGAAAGTGCAGAGCCGAAAGACTGTTCCGTT
AGCCAAGAAGAAACCGTAACAGCAGAAGAAACCGCATCTGCCGAAACCAATGAAGCAGAAACCGCAACTACCGTTACCGA
AGAAGAGACACCGCAAAAAACAGGGGGTTGGGCAGCGCGTTTGAAAGAAGGCTTAAGCAAATCGCGCAACCACATGGCAA
AATCCTTGGCATCGGTGTTTGGCGGCGGACAAATTGACGAAGATTTGTATGAAGAATTGGAAACCGTGCTGCTGACCAGC
GACATGGGCATTGAAGCCACCGAAAAACTGATGGACGAAGTGCGCCGCCGTGTGTCTTTAAGCGGATTAAAAGACGGCAA
CGAATTGCGTCAAACCTTAAAAGAAGCCGTGCGCGATTTGCTTTCGCCTTTGGAACAACCCCTTGCCATTCCCGAAGGGC
AAGGACCGTTTGTGATTATGATGGCGGGCATTAACGGCGCGGGCAAAACCACGTCCATCGGCAAGCTGGCGAAATATTTT
CAGGCACAAGGCAAATCGGTGCTGTTGGCGGCAGGCGATACCTTCCGCGCTGCTGCGCGTGAACAGTTGCAGGAGTGGGG
ACGGCGCAACGGCGTTACCGTGATTTCGCAAGAGTCCGCAGATTCCGCCGCCGTGTGTTTTGATGCCTTGGAAGCTGCCA
AAGCGCGTAAAATTGATATTGTGCTGGCAGACACCGCAGGACGTTTGCCCACCCAATTGCATTTGATGGAAGAAATCAAA
AAAGTCAAACGGGTATTGCAAAAAGCCATTCCCGATGCCCCGCATGAAGTGATGGTGGTATTGGATGCCAATATCGGACA
AAACGCCGTGAATCAGGTGGCTGCGTTTGATGAAGCCTTGGGCGTAACGGGTTTGGTGGTCACCAAATTGGACGGGACGG
CAAAAGGCGGCGTGTTGGCGGCATTGGCAGAACGCGGCATTCCTGTGCGCTTTATCGGTGTGGGCGAAAAAATTGACGAT
TTGCGCCCCTTTGATACCGAGGCTTTTGTAGAAGCTCTGTTTGAAGACGAACAGGCATAA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(296-494)

SRP54-type protein, helical bundle domain (SRP54_N)

(214-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

77.064

65.531

0.505