Detailed information NTG0689747

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: OTU47_RS00905
• Genome accession: NZ_CP113115
• Coordinates: 184418..185416 (-)
• Length: 332 a.a.
• NCBI ID: WP_001810337.1
• Uniprot ID: -
• Organism: Streptococcus pneumoniae strain NP2
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 179418..190416

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OTU47_RS00885 (OTU47_00885)	eeP	180783..182042 (-)	1260	WP_000900660.1	RIP metalloprotease RseP	Regulator
OTU47_RS00890 (OTU47_00890)	-	182064..182867 (-)	804	WP_000189857.1	phosphatidate cytidylyltransferase	-
OTU47_RS00895 (OTU47_00895)	-	182876..183634 (-)	759	WP_000466719.1	isoprenyl transferase	-
OTU47_RS00900 (OTU47_00900)	-	183865..184437 (-)	573	Protein_176	nucleotidyltransferase family protein	-
OTU47_RS00905 (OTU47_00905)	ruvB	184418..185416 (-)	999	WP_001810337.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
OTU47_RS00910 (OTU47_00910)	-	185550..185642 (+)	93	WP_000970381.1	type I toxin-antitoxin system Fst family toxin	-
OTU47_RS00915 (OTU47_00915)	-	186457..186873 (-)	417	WP_267749973.1	GNAT family N-acetyltransferase	-
OTU47_RS00920 (OTU47_00920)	-	186885..187580 (-)	696	WP_001144913.1	GNAT family N-acetyltransferase	-
OTU47_RS00925 (OTU47_00925)	leuS	187774..190275 (-)	2502	WP_000011740.1	leucine--tRNA ligase	-

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 37306.76 Da
• Isoelectric Point: 4.5053

>NTDB_id=689747 OTU47_RS00905 WP_001810337.1 184418..185416(-) (ruvB) [Streptococcus pneumoniae strain NP2]
MSRILDNEMMGDEELVERTLRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMAFVIANELGVNL
KQTSGPVIEKAGDLVAILNELEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGAGEGSRSVHLELPPFTLIGATTR
AGMLSNPLRARFGITGHMEYYAHADLTEIVERTADIFEMEITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGNGVID
DIITDKALTMLDVDHEGLDYVDQKILRTMIEMYSGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRSGRVATAK
AYEHLGYEYSEK

Nucleotide

• Length: 999 bp

>NTDB_id=689747 OTU47_RS00905 WP_001810337.1 184418..185416(-) (ruvB) [Streptococcus pneumoniae strain NP2]
ATGAGTAGAATTTTAGATAATGAGATGATGGGTGATGAGGAGTTAGTAGAACGCACGCTCCGTCCTCAGTATTTACGTGA
ATATATTGGTCAGGATAAGGTTAAGGATCAGCTTCAGATCTTTATCGAAGCCGCTAAAATGCGGGATGAAGCGCTGGATC
ATGTGCTCTTATTTGGCCCTCCAGGTTTGGGGAAAACAACCATGGCTTTTGTCATTGCCAATGAACTGGGAGTCAATCTC
AAGCAAACGTCTGGTCCTGTTATCGAAAAAGCGGGTGATTTGGTAGCGATTTTGAATGAGTTAGAGCCTGGAGATGTCCT
CTTTATTGACGAGATTCATCGCTTACCCATGTCAGTGGAAGAAGTGCTTTATAGTGCCATGGAGGACTTCTACATCGATA
TTATGATTGGGGCTGGTGAAGGCAGTCGCAGTGTTCATTTGGAGTTGCCTCCTTTTACCTTGATTGGTGCGACGACTCGG
GCTGGTATGCTCTCAAATCCACTACGGGCACGTTTTGGGATTACAGGTCATATGGAGTATTATGCCCATGCTGACTTGAC
AGAAATTGTCGAGCGGACGGCAGATATTTTTGAGATGGAAATCACTCATGAGGCAGCATCTGAGTTGGCCCTACGTAGTC
GTGGAACCCCTCGTATTGCCAATCGTCTCCTCAAGCGCGTGCGCGATTTTGCCCAGATAATGGGGAATGGGGTAATCGAT
GATATTATTACCGATAAGGCTTTGACTATGCTGGATGTTGACCATGAAGGTTTGGACTATGTGGATCAAAAAATCCTTCG
TACCATGATTGAGATGTACAGTGGAGGACCTGTTGGTCTAGGAACTCTTTCTGTCAATATCGCCGAAGAGCGTGAGACAG
TTGAAGACATGTATGAGCCTTACTTGATTCAAAAAGGTTTTATCATGCGGACACGGTCTGGACGGGTGGCGACTGCTAAG
GCATATGAGCACTTAGGTTATGAATACAGTGAAAAATAA

Domains

Predicted by InterProScan.

• RuvB AAA lid domain (AAA_lid_4) (181-254)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

• RuvB C-terminal winged helix domain (WHD_RuvB) (256-325)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae R6	99.699	100	0.997
ruvB	Streptococcus pneumoniae D39	99.699	100	0.997
ruvB	Streptococcus pneumoniae TIGR4	99.398	100	0.994
ruvB	Bacillus subtilis subsp. subtilis str. 168	60.429	98.193	0.593
ruvB	Helicobacter pylori 26695	50.774	97.289	0.494
ruvB	Synechocystis sp. PCC 6803	49.84	94.277	0.47