Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   OTU47_RS00445 Genome accession   NZ_CP113115
Coordinates   77401..77997 (+) Length   198 a.a.
NCBI ID   WP_000248787.1    Uniprot ID   H8ZYP5
Organism   Streptococcus pneumoniae strain NP2     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 72401..82997
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OTU47_RS00420 (OTU47_00420) mapZ 73359..74753 (-) 1395 WP_000039275.1 cell division site-positioning protein MapZ -
  OTU47_RS00425 (OTU47_00425) - 74766..75923 (-) 1158 WP_050117921.1 class I SAM-dependent RNA methyltransferase -
  OTU47_RS00435 (OTU47_00435) gpsB 76409..76738 (-) 330 WP_000146522.1 cell division regulator GpsB -
  OTU47_RS00440 (OTU47_00440) - 76808..77335 (-) 528 WP_050117922.1 DUF1273 domain-containing protein -
  OTU47_RS00445 (OTU47_00445) recU 77401..77997 (+) 597 WP_000248787.1 Holliday junction resolvase RecU Machinery gene
  OTU47_RS00450 (OTU47_00450) pbp1a 77994..80153 (+) 2160 WP_001040024.1 penicillin-binding protein PBP1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23130.53 Da        Isoelectric Point: 9.8515

>NTDB_id=689743 OTU47_RS00445 WP_000248787.1 77401..77997(+) (recU) [Streptococcus pneumoniae strain NP2]
MVNYPHKVSSQKRQTSLSQPKNFANRGMSFEKMINATNDYYLSQGLAVIHKKPTPIQIVQVDYPQRSRAKIVEAYFRQAS
TTDYSGVYNGYYIDFEVKETKQKRAIPMKNFHPHQIQHMEQVLAQQGICFVLLHFSSQQETYLLPAFDLIRFYHQDKGQK
SMPLEYIREYGYEIKAGAFPQIPYLNVIKEHLLGGKTR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=689743 OTU47_RS00445 WP_000248787.1 77401..77997(+) (recU) [Streptococcus pneumoniae strain NP2]
ATGGTCAACTATCCACATAAAGTTTCATCACAAAAAAGACAAACATCTCTTTCTCAACCCAAAAATTTCGCAAATCGAGG
AATGTCTTTTGAAAAGATGATCAATGCTACCAACGACTACTATTTGTCTCAGGGCTTGGCTGTCATACATAAGAAACCAA
CTCCTATTCAAATCGTACAAGTGGACTATCCACAACGAAGTCGTGCCAAGATTGTTGAAGCCTATTTTCGACAAGCTTCA
ACGACGGACTATTCTGGCGTTTATAATGGATATTACATCGACTTTGAAGTCAAGGAAACAAAACAAAAACGTGCGATTCC
GATGAAAAATTTTCATCCACATCAGATTCAGCATATGGAACAAGTCCTTGCCCAACAAGGAATCTGCTTTGTCCTTCTTC
ACTTTTCTTCTCAGCAAGAAACCTACTTATTGCCGGCATTCGATTTGATTCGCTTCTATCATCAAGATAAGGGACAAAAA
TCAATGCCACTTGAATATATTCGAGAATATGGATATGAAATCAAGGCTGGTGCCTTCCCTCAAATTCCTTATCTCAATGT
TATCAAAGAACATTTATTAGGTGGTAAAACAAGATGA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(26-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB H8ZYP5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

48.5

100

0.49