Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   M6G63_RS03575 Genome accession   NZ_CP097489
Coordinates   789541..790908 (+) Length   455 a.a.
NCBI ID   WP_043208425.1    Uniprot ID   A0AAX0W2P5
Organism   Pseudomonas sp. BYT-5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 784541..795908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M6G63_RS03550 (M6G63_03550) cydB 785612..786619 (+) 1008 WP_043208417.1 cytochrome d ubiquinol oxidase subunit II -
  M6G63_RS03555 (M6G63_03555) - 786631..786771 (+) 141 WP_043208419.1 DUF2474 domain-containing protein -
  M6G63_RS03560 (M6G63_03560) - 786803..787927 (-) 1125 WP_043208421.1 methyltransferase -
  M6G63_RS03565 (M6G63_03565) - 788097..788873 (+) 777 WP_090345155.1 ferredoxin--NADP reductase -
  M6G63_RS03570 (M6G63_03570) mscL 788955..789365 (-) 411 WP_043208423.1 large-conductance mechanosensitive channel protein MscL -
  M6G63_RS03575 (M6G63_03575) radA 789541..790908 (+) 1368 WP_043208425.1 DNA repair protein RadA Machinery gene
  M6G63_RS03580 (M6G63_03580) - 791031..792548 (-) 1518 WP_043208427.1 nucleobase:cation symporter-2 family protein -
  M6G63_RS03585 (M6G63_03585) - 792810..793175 (-) 366 WP_043208430.1 PilZ domain-containing protein -
  M6G63_RS03590 (M6G63_03590) - 793345..795411 (+) 2067 WP_043208433.1 carbon starvation CstA family protein -
  M6G63_RS03595 (M6G63_03595) - 795430..795627 (+) 198 WP_008094130.1 YbdD/YjiX family protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48753.23 Da        Isoelectric Point: 7.1317

>NTDB_id=689718 M6G63_RS03575 WP_043208425.1 789541..790908(+) (radA) [Pseudomonas sp. BYT-5]
MAKAKRLYGCTECGATFPKWAGQCGECGAWNTLVETMIESGGAAAPAGRTGWAGQQAQIKTLAEVSVEEIPRFTTSSTEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIATRMPALYVTGEESQQQVAMRSRRLGLPQEQLKVMTETCIETIIA
TARVEKPRVMVIDSIQTIFTEQLQSAPGGVAQVRESTALLVRYAKQSGTAIFLVGHVTKEGSLAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLNRTQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALLAAVMSSLRNRPLAHGLLVFGEIGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPAGLQVIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=689718 M6G63_RS03575 WP_043208425.1 789541..790908(+) (radA) [Pseudomonas sp. BYT-5]
ATGGCCAAGGCCAAGCGCTTGTATGGCTGCACTGAGTGCGGCGCAACCTTTCCCAAATGGGCTGGCCAATGCGGCGAATG
CGGGGCCTGGAACACACTGGTCGAGACCATGATCGAAAGCGGTGGCGCCGCAGCCCCGGCCGGGCGTACCGGCTGGGCCG
GGCAGCAGGCGCAGATCAAGACCCTGGCCGAAGTCAGCGTCGAGGAGATCCCACGCTTCACCACCAGCAGCACCGAGCTT
GACCGAGTGCTGGGCGGGGGCCTGGTGGATGGCTCGGTAGTGCTCATCGGCGGCGATCCGGGCATCGGCAAGTCGACCAT
CCTTCTGCAGACCCTGTGCAACATCGCCACCCGCATGCCGGCCCTGTACGTCACCGGGGAGGAATCCCAGCAGCAGGTAG
CCATGCGTTCGCGTCGCCTGGGGTTGCCCCAGGAGCAGCTCAAGGTGATGACCGAGACTTGTATCGAGACGATCATCGCC
ACCGCACGGGTGGAAAAACCCCGGGTCATGGTCATCGACTCGATCCAGACCATCTTCACCGAACAGTTGCAGTCAGCCCC
CGGCGGCGTTGCCCAGGTGCGCGAAAGCACGGCCTTGCTGGTGCGCTATGCCAAGCAAAGCGGTACGGCAATCTTCCTGG
TGGGCCATGTCACCAAGGAAGGCTCGCTCGCCGGCCCGAGGGTGCTGGAGCACATGGTCGATACCGTGCTGTATTTCGAG
GGCGAATCCGATGGCCGACTGCGTCTGCTGCGGGCGGTGAAGAACCGCTTCGGCGCGGTCAACGAACTGGGCGTGTTCGG
CATGACCGACCGTGGGCTCAAGGAGGTCTCCAACCCGTCGGCGATCTTCCTCAACCGCACCCAGGAGGAAGTTCCGGGCA
GCGTGGTGATGGCGACCTGGGAGGGCACCCGGCCGATGCTGGTGGAAGTCCAGGCGCTGGTGGACGACAGCCACCTGGCC
AACCCACGGCGGGTCACCCTGGGCCTGGACCAGAACCGCCTGGCCATGTTGCTGGCGGTCCTGCATCGACACGGCGGGAT
TCCCACCCATGACCAGGACGTGTTCCTCAACGTAGTGGGTGGGGTGAAGGTGCTGGAGACGGCTTCTGACCTGGCGTTGC
TCGCGGCAGTGATGTCCAGCCTGCGCAACCGCCCGCTGGCCCATGGGCTGCTGGTGTTCGGCGAGATCGGCCTGTCTGGC
GAAGTGCGTCCGGTACCCAGCGGCCAAGAGCGCCTCAAGGAGGCGGCCAAGCATGGCTTCAAGCGCGCCATCGTGCCCAA
GGGCAATGCGCCGAAGGAGGCGCCGGCGGGCTTGCAGGTCATTGCCGTGACGCGCCTGGAGCAGGCGCTGGATGCATTGT
TCGAGTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(73-221)

Subunit ChlI of Mg-chelatase (ChlI)

(354-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.904

100

0.49
  radA Streptococcus pneumoniae Rx1

45.969

100

0.464
  radA Streptococcus pneumoniae D39

45.969

100

0.464
  radA Streptococcus pneumoniae TIGR4

45.969

100

0.464
  radA Streptococcus pneumoniae R6

45.969

100

0.464
  radA Streptococcus mitis NCTC 12261

45.752

100

0.462
  radA Streptococcus mitis SK321

45.934

100

0.459