Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   M5J74_RS23065 Genome accession   NZ_CP097480
Coordinates   5000855..5002375 (+) Length   506 a.a.
NCBI ID   WP_015156347.1    Uniprot ID   K9U411
Organism   Chroococcidiopsis sp. CCNUC1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4995855..5007375
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5J74_RS23035 (M5J74_23035) hypD 4996251..4997357 (+) 1107 WP_250013370.1 hydrogenase formation protein HypD -
  M5J74_RS23040 (M5J74_23040) hypE 4997392..4998447 (+) 1056 WP_250013372.1 hydrogenase expression/formation protein HypE -
  M5J74_RS23045 (M5J74_23045) - 4998459..4998974 (-) 516 WP_015156344.1 DUF456 domain-containing protein -
  M5J74_RS23050 (M5J74_23050) - 4999062..4999724 (-) 663 WP_250013373.1 cofactor assembly of complex C subunit B -
  M5J74_RS23055 (M5J74_23055) - 4999717..4999926 (-) 210 WP_250013375.1 hypothetical protein -
  M5J74_RS23060 (M5J74_23060) rpaB 4999940..5000668 (-) 729 WP_015156346.1 response regulator transcription factor RpaB -
  M5J74_RS23065 (M5J74_23065) radA 5000855..5002375 (+) 1521 WP_015156347.1 DNA repair protein RadA Machinery gene
  M5J74_RS23070 (M5J74_23070) - 5002413..5002568 (-) 156 WP_250013377.1 hypothetical protein -
  M5J74_RS23075 (M5J74_23075) - 5002715..5002978 (+) 264 WP_015156348.1 hypothetical protein -
  M5J74_RS23080 (M5J74_23080) - 5003080..5004219 (-) 1140 WP_015156349.1 glycosyltransferase family 1 protein -
  M5J74_RS23085 (M5J74_23085) - 5004251..5004898 (-) 648 WP_250013379.1 DUF4291 domain-containing protein -
  M5J74_RS23090 (M5J74_23090) - 5004967..5006118 (-) 1152 WP_015156351.1 UDP-sulfoquinovose synthase -
  M5J74_RS23095 (M5J74_23095) - 5006383..5006718 (+) 336 WP_015156352.1 hypothetical protein -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54753.60 Da        Isoelectric Point: 5.1470

>NTDB_id=689704 M5J74_RS23065 WP_015156347.1 5000855..5002375(+) (radA) [Chroococcidiopsis sp. CCNUC1]
MPKPRTYFVCNECGAESPQWFGKCPACGTYNSLEEQITSTTLGTLPTRGVSWQQTPQSNGKSIAKAAKPRASLTFDQISD
RQVSRWCSGYDELDRVLGGGIVPGSMVLIGGDPGIGKSTLLLQVSNQLAQNYRILYVCGEESGQQVKLRASRLGVSKFQN
PIEESDPQLQNQSPNGHLVNNGSARADLYVLPETDLEEILREVDSLKPNVAVIDSIQTVYFPALTSAPGSVAQVRECTSA
LMQVAKREDITMLIVGHVTKEGAIAGPKVLEHLVDTVLYFEGDRFASHRLLRTVKNRFGATHEIGIFEMIDRGLREVANP
SELFLGSRDDPSPGTAIVVACEGTRPIVVELQALVSPTSYASPRRSTTGIDYSRLLQILAVLEKRVGIPLSKLDAYVASA
GGLSVEEPAVDLGVAIAVVASFRDRIVDQRTVLIGEVGLGGQVRPVSQMELRLKEAAKLGFKRAIVPKGQPYPDVDLEII
PVAKVLDAIIAAIPPQSFPDLDLEEE

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=689704 M5J74_RS23065 WP_015156347.1 5000855..5002375(+) (radA) [Chroococcidiopsis sp. CCNUC1]
ATGCCCAAACCCCGTACCTATTTCGTTTGCAATGAATGTGGCGCAGAGTCGCCTCAGTGGTTTGGTAAGTGTCCTGCCTG
CGGGACTTACAATTCCTTAGAAGAACAAATTACGAGTACAACTCTCGGGACGCTACCAACTCGTGGGGTTAGCTGGCAGC
AAACGCCGCAAAGCAATGGCAAATCAATCGCTAAAGCCGCAAAACCCCGCGCTTCTCTAACTTTCGACCAAATTAGCGAT
CGCCAAGTGAGCCGCTGGTGTTCTGGCTATGACGAACTCGACCGAGTACTCGGTGGTGGTATTGTACCAGGTTCTATGGT
TTTGATCGGCGGCGATCCGGGGATTGGCAAATCGACTTTGTTACTACAGGTTTCTAACCAACTCGCCCAAAACTATCGCA
TTCTCTACGTTTGCGGTGAAGAGTCAGGACAGCAAGTGAAGTTACGCGCTTCTCGTTTGGGTGTATCTAAATTTCAAAAC
CCTATAGAGGAATCAGATCCCCAGCTTCAAAACCAATCGCCTAACGGTCATTTAGTTAACAATGGTAGTGCAAGAGCCGA
TTTATACGTTTTGCCAGAAACAGATCTCGAAGAAATACTGAGGGAAGTCGATTCGCTCAAACCCAATGTAGCTGTCATCG
ATAGTATCCAAACCGTCTATTTTCCCGCCTTAACTTCCGCCCCTGGTTCGGTAGCACAGGTGCGAGAATGTACCTCAGCC
CTGATGCAAGTCGCAAAACGGGAAGATATTACGATGTTAATTGTGGGACACGTTACCAAAGAAGGTGCGATTGCGGGTCC
CAAAGTTTTAGAACATTTGGTAGATACAGTACTTTATTTTGAAGGCGATCGCTTCGCCTCCCATCGGTTGTTACGCACAG
TCAAGAATCGCTTTGGCGCTACTCATGAAATTGGCATCTTTGAAATGATCGATCGCGGGTTGCGGGAAGTCGCCAACCCT
TCAGAATTATTTCTCGGTAGCCGCGACGATCCTTCACCAGGAACGGCGATAGTGGTTGCTTGCGAAGGCACGCGCCCGAT
TGTGGTAGAGTTACAAGCCTTGGTTAGTCCCACCAGCTATGCTTCACCCCGTCGTTCTACCACGGGGATAGACTACAGCC
GTTTACTGCAAATTTTGGCAGTGTTAGAAAAACGAGTTGGCATTCCTTTGTCTAAACTGGATGCCTATGTCGCCTCTGCT
GGTGGCTTAAGCGTGGAAGAACCAGCTGTAGATCTGGGAGTCGCGATCGCCGTAGTCGCTTCTTTCCGCGATCGCATTGT
CGATCAGCGCACTGTTTTAATTGGAGAAGTCGGGTTAGGCGGACAAGTACGCCCCGTCTCTCAAATGGAACTGCGTCTGA
AAGAAGCTGCTAAACTAGGATTTAAGCGGGCAATTGTACCCAAAGGGCAACCCTATCCTGACGTAGATTTGGAAATTATT
CCTGTCGCCAAAGTACTCGATGCGATTATCGCTGCAATCCCCCCACAATCGTTCCCAGATTTAGATTTAGAAGAGGAATA
G

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(403-468)

KaiC (ATPase)

(89-297)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K9U411

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.898

98.617

0.482
  radA Streptococcus mitis SK321

44.309

97.233

0.431
  radA Streptococcus mitis NCTC 12261

44.309

97.233

0.431
  radA Streptococcus pneumoniae TIGR4

45.94

92.49

0.425
  radA Streptococcus pneumoniae D39

45.94

92.49

0.425
  radA Streptococcus pneumoniae Rx1

45.94

92.49

0.425
  radA Streptococcus pneumoniae R6

45.94

92.49

0.425