Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   OTU45_RS09810 Genome accession   NZ_CP113114
Coordinates   1927450..1928160 (+) Length   236 a.a.
NCBI ID   WP_000760673.1    Uniprot ID   A0A0H2URH4
Organism   Streptococcus pneumoniae strain NP1     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1922450..1933160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OTU45_RS09795 (OTU45_09795) - 1922991..1923239 (-) 249 WP_000364990.1 YneF family protein -
  OTU45_RS09800 (OTU45_09800) treC 1923495..1925120 (-) 1626 WP_000171212.1 alpha,alpha-phosphotrehalase -
  OTU45_RS09805 (OTU45_09805) treP 1925298..1927265 (-) 1968 WP_000514351.1 PTS system trehalose-specific EIIBC component -
  OTU45_RS09810 (OTU45_09810) treR 1927450..1928160 (+) 711 WP_000760673.1 trehalose operon repressor Regulator
  OTU45_RS09815 (OTU45_09815) - 1928315..1929641 (+) 1327 Protein_1951 ISL3 family transposase -
  OTU45_RS09820 (OTU45_09820) - 1929716..1930642 (-) 927 WP_001291293.1 ATP-binding cassette domain-containing protein -
  OTU45_RS09825 (OTU45_09825) amiE 1930653..1931720 (-) 1068 WP_000159554.1 ABC transporter ATP-binding protein Regulator
  OTU45_RS09830 (OTU45_09830) amiD 1931729..1932655 (-) 927 WP_000103700.1 oligopeptide ABC transporter permease OppC Regulator

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27607.78 Da        Isoelectric Point: 8.9698

>NTDB_id=689703 OTU45_RS09810 WP_000760673.1 1927450..1928160(+) (treR) [Streptococcus pneumoniae strain NP1]
MKKYQQLFKQIQETIQNETYAVGDFLPSEHDLMEQYQVSRDTVRKALSLLQEEGLIKKIRGQGSQVVKEETVNFPVSNLT
SYQELVKELGLRSKTNVVSLDKIIIDKKSSLITGFPEFRMVWKVVRQRVVDDLVSVLDTDYLDMELIPNLTRQIAEQSIY
SYIENGLKLLIDYAQKEITIDHSSDRDKILMDIGKDPYVVSIKSKVYLQDGRQFQFTESRHKLEKFRFVDFAKRKK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=689703 OTU45_RS09810 WP_000760673.1 1927450..1928160(+) (treR) [Streptococcus pneumoniae strain NP1]
ATGAAGAAATACCAACAATTATTTAAGCAAATCCAAGAAACCATTCAAAACGAGACTTACGCTGTCGGAGATTTCCTTCC
TAGCGAGCACGACCTTATGGAGCAATATCAAGTGAGTCGTGATACCGTCCGAAAGGCCCTGTCTCTCCTCCAAGAGGAAG
GATTGATCAAAAAGATAAGAGGGCAAGGTTCTCAAGTCGTCAAAGAAGAAACCGTCAATTTCCCTGTATCCAACCTAACC
AGCTACCAAGAACTAGTTAAAGAACTTGGACTGCGCTCTAAAACCAACGTGGTCAGTCTGGACAAGATTATTATTGATAA
AAAATCCTCACTGATAACCGGTTTCCCAGAGTTTCGGATGGTTTGGAAGGTGGTCCGCCAGCGTGTGGTGGATGATCTGG
TATCCGTTCTGGATACGGACTATCTGGATATGGAACTAATCCCAAATCTCACTCGCCAAATTGCTGAGCAGTCTATCTAT
TCTTATATAGAAAATGGCCTCAAACTCCTTATTGATTATGCTCAGAAGGAAATCACCATTGACCACTCAAGCGACCGAGA
CAAGATTCTCATGGACATTGGCAAAGACCCTTATGTCGTTTCGATTAAATCAAAAGTCTATCTCCAAGACGGACGCCAAT
TTCAGTTTACCGAAAGTCGCCATAAGTTAGAAAAATTTAGATTTGTAGATTTTGCAAAACGCAAGAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(89-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2URH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

59.322

100

0.593