Detailed information    

insolico Bioinformatically predicted

Overview


Name   ceuB   Type   Machinery gene
Locus tag   OTU45_RS09725 Genome accession   NZ_CP113114
Coordinates   1913129..1914088 (+) Length   319 a.a.
NCBI ID   WP_000777236.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain NP1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1908129..1919088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OTU45_RS09700 (OTU45_09700) - 1908329..1909093 (-) 765 WP_000082875.1 nuclear transport factor 2 family protein -
  OTU45_RS09705 (OTU45_09705) - 1909097..1909540 (-) 444 WP_000655202.1 MarR family winged helix-turn-helix transcriptional regulator -
  OTU45_RS09710 (OTU45_09710) - 1910222..1910518 (-) 297 WP_000230147.1 bacteriocin immunity protein -
  OTU45_RS09715 (OTU45_09715) pepA 1910540..1911604 (-) 1065 WP_000209196.1 glutamyl aminopeptidase -
  OTU45_RS09720 (OTU45_09720) galE 1912005..1912706 (+) 702 WP_000167833.1 UDP-glucose 4-epimerase GalE -
  OTU45_RS12125 - 1912722..1912832 (+) 111 WP_001108391.1 hypothetical protein -
  OTU45_RS09725 (OTU45_09725) ceuB 1913129..1914088 (+) 960 WP_000777236.1 ABC transporter permease Machinery gene
  OTU45_RS09730 (OTU45_09730) - 1914078..1915034 (+) 957 WP_001193668.1 iron chelate uptake ABC transporter family permease subunit -
  OTU45_RS09735 (OTU45_09735) - 1915031..1915783 (+) 753 WP_000764306.1 ABC transporter ATP-binding protein -
  OTU45_RS09740 (OTU45_09740) - 1915879..1916844 (+) 966 WP_000858260.1 siderophore ABC transporter substrate-binding protein -
  OTU45_RS09750 (OTU45_09750) yidD 1917069..1917311 (-) 243 WP_000821640.1 membrane protein insertion efficiency factor YidD -
  OTU45_RS09755 (OTU45_09755) - 1917311..1918033 (-) 723 WP_001222228.1 pseudouridine synthase -
  OTU45_RS09760 (OTU45_09760) scpB 1918020..1918589 (-) 570 WP_000105310.1 SMC-Scp complex subunit ScpB -

Sequence


Protein


Download         Length: 319 a.a.        Molecular weight: 35432.32 Da        Isoelectric Point: 9.7465

>NTDB_id=689702 OTU45_RS09725 WP_000777236.1 1913129..1914088(+) (ceuB) [Streptococcus pneumoniae strain NP1]
MKLSHYLIGLLLLLVFLSISIGTSDFSWGKLFDFDQQTWLLFQESRLPRTISILLTASSMSMAGLLMQTITQNQFAAPST
VGTTEAAKLGMVLSLFVFPSASLTQKMLFAFISSIVFTLFFLAFMTIFTVKERWMLPLIGIIYSGIIGSVTEVIAYRFNL
VQSMTAWTQGSFSMIQTHQYEWLFLGLIILITVWKLSQTFTIMNLGKETSESLGISYSLLEKLALFLVALTTSVTMITVG
GLPFLGVIVPNLVRKRYGDNLSQTKLMVALVGANLVLACDILSRVLIRPYELSVSLLLGIIGSLVFILLLWRGGRKDAD

Nucleotide


Download         Length: 960 bp        

>NTDB_id=689702 OTU45_RS09725 WP_000777236.1 1913129..1914088(+) (ceuB) [Streptococcus pneumoniae strain NP1]
ATGAAACTTTCTCATTATTTAATTGGCTTACTTCTACTCCTAGTCTTTCTCTCTATTAGCATTGGGACCAGTGATTTTTC
ATGGGGAAAGCTATTTGATTTCGACCAGCAGACCTGGCTCCTCTTTCAAGAGTCCCGTCTCCCAAGAACTATCAGTATTC
TCCTGACTGCCTCTAGTATGAGTATGGCAGGCCTTCTCATGCAGACTATTACCCAAAATCAGTTTGCTGCACCGAGTACA
GTTGGAACGACTGAAGCCGCCAAACTGGGGATGGTGCTGAGCCTTTTTGTCTTTCCATCGGCTAGTCTGACCCAAAAGAT
GCTCTTCGCTTTTATTTCATCCATCGTATTCACCCTCTTCTTCCTAGCCTTTATGACCATTTTTACTGTAAAGGAAAGGT
GGATGTTACCTCTGATTGGGATCATCTATAGCGGAATTATCGGCTCAGTCACAGAAGTTATCGCCTATCGTTTCAATCTG
GTTCAGAGTATGACTGCCTGGACCCAGGGCTCCTTCTCCATGATTCAGACCCATCAGTATGAGTGGCTCTTCTTAGGCCT
CATCATCCTGATAACCGTTTGGAAATTATCCCAAACCTTCACCATCATGAATCTAGGGAAAGAAACCAGCGAGAGTTTGG
GGATTTCCTACTCCCTACTTGAAAAACTGGCCCTCTTTCTGGTGGCGCTAACGACAAGCGTCACCATGATTACCGTGGGT
GGCCTACCATTTCTCGGAGTTATCGTTCCCAATCTTGTTCGCAAGCGCTATGGAGATAATCTAAGTCAAACCAAACTCAT
GGTCGCACTGGTTGGTGCCAATCTAGTTCTGGCTTGCGATATCCTATCCCGAGTTCTGATTAGGCCCTATGAGTTGTCTG
TCAGTCTCTTGCTAGGAATCATCGGTAGTCTCGTCTTTATCCTACTTCTCTGGAGAGGGGGACGAAAAGATGCAGACTAA

Domains


Predicted by InterProScan.

(10-312)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

37.097

97.179

0.361