Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   OTU45_RS05920 Genome accession   NZ_CP113114
Coordinates   1187370..1188440 (+) Length   356 a.a.
NCBI ID   WP_000817882.1    Uniprot ID   Q7ZAK7
Organism   Streptococcus pneumoniae strain NP1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1182370..1193440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OTU45_RS05905 (OTU45_05905) ylqF 1183603..1184454 (+) 852 WP_000201317.1 ribosome biogenesis GTPase YlqF -
  OTU45_RS05910 (OTU45_05910) - 1184441..1185220 (+) 780 WP_000201133.1 ribonuclease HII -
  OTU45_RS05915 (OTU45_05915) - 1185236..1186786 (+) 1551 WP_000392559.1 ClC family H(+)/Cl(-) exchange transporter -
  OTU45_RS05920 (OTU45_05920) xerS 1187370..1188440 (+) 1071 WP_000817882.1 tyrosine recombinase XerS Machinery gene
  OTU45_RS05925 (OTU45_05925) - 1188507..1189496 (-) 990 WP_000873987.1 lipoate--protein ligase -
  OTU45_RS05930 (OTU45_05930) lpdA 1189560..1191263 (-) 1704 WP_001162918.1 dihydrolipoyl dehydrogenase -
  OTU45_RS05935 (OTU45_05935) - 1191309..1192352 (-) 1044 WP_000752705.1 dihydrolipoamide acetyltransferase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41171.21 Da        Isoelectric Point: 9.6220

>NTDB_id=689676 OTU45_RS05920 WP_000817882.1 1187370..1188440(+) (xerS) [Streptococcus pneumoniae strain NP1]
MKREILLERIDKLKQLMPWYVLEYYQSKLAVPYSFTTLYEYLKEYDRFFSWVLESGISNADKISDIPLSVLENMSKKDME
SFILYLRERPLLNANTTKQGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETEGFLTYIDQEHPQQLSNRALSSFNKNKERDLAIIALLLASGVRLSEAVNLDLRDLNLKMMVIDVTRKGGKRDS
VNVAAFAKPYLENYLAIRNQRYKTEKTDTALFLTLYRGVPNRIDASSVEKMVAKYSEDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDSL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=689676 OTU45_RS05920 WP_000817882.1 1187370..1188440(+) (xerS) [Streptococcus pneumoniae strain NP1]
ATGAAACGTGAGATTTTACTGGAACGAATCGACAAACTAAAACAACTCATGCCCTGGTATGTTCTGGAATACTACCAATC
TAAGCTGGCTGTGCCCTACAGTTTTACAACCCTGTACGAATACCTTAAGGAATATGACCGATTTTTCAGCTGGGTTTTGG
AGTCTGGTATTTCAAACGCTGATAAAATATCCGATATTCCTTTATCAGTTTTGGAAAATATGTCTAAGAAAGACATGGAA
TCCTTTATCCTTTATCTACGTGAACGTCCCTTGCTGAATGCTAATACAACAAAACAAGGTGTTTCACAGACAACTATCAA
TCGAACCTTATCAGCACTTTCTAGTCTTTACAAGTATCTAACCGAGGAGGTTGAAAACGATCAGGGGGAACCTTATTTCT
ATCGTAATGTAATGAAAAAAGTTTCAACCAAGAAAAAGAAAGAAACCCTTGCTGCCAGAGCTGAAAATATCAAGCAAAAA
CTCTTTCTAGGTGATGAAACAGAAGGTTTTCTAACTTATATCGATCAAGAGCACCCACAACAGCTTTCAAATCGAGCTCT
CTCATCATTCAACAAAAATAAAGAACGAGATTTAGCCATTATTGCCCTTCTCTTGGCATCTGGTGTTCGCTTATCTGAAG
CTGTTAATCTAGATCTAAGAGATCTCAATCTAAAAATGATGGTTATTGATGTTACTCGAAAAGGTGGCAAACGTGACTCA
GTCAATGTCGCTGCTTTTGCTAAACCTTATTTAGAGAATTATCTGGCCATTCGGAATCAACGCTATAAAACGGAAAAAAC
AGATACAGCCCTTTTTTTAACTCTCTACAGAGGTGTTCCTAATCGTATCGATGCTTCTAGCGTTGAGAAAATGGTTGCTA
AATACTCAGAGGATTTTAAAGTGCGTGTAACACCCCATAAACTGCGCCATACGCTAGCAACTAGGCTCTATGATGCGACT
AAATCACAAGTTTTAGTCAGTCACCAACTAGGACATGCCAGCACACAAGTCACTGACCTCTATACCCATATTGTTAATGA
TGAACAAAAGAATGCTCTAGATAGTTTATGA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(188-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_1)

(71-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7ZAK7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

100

100

1