Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   M8332_RS01590 Genome accession   NZ_CP097478
Coordinates   336400..337782 (+) Length   460 a.a.
NCBI ID   WP_252780436.1    Uniprot ID   -
Organism   Fructilactobacillus ixorae strain Ru20-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 331400..342782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8332_RS01565 (M8332_01565) - 331590..332738 (-) 1149 WP_252780432.1 LCP family protein -
  M8332_RS01570 (M8332_01570) - 332910..333581 (+) 672 WP_252780775.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase -
  M8332_RS01575 (M8332_01575) - 333632..334966 (-) 1335 WP_252780433.1 C1 family peptidase -
  M8332_RS01580 (M8332_01580) rpiA 335017..335703 (-) 687 WP_252780434.1 ribose-5-phosphate isomerase RpiA -
  M8332_RS01585 (M8332_01585) - 335849..336385 (+) 537 WP_252780435.1 dUTP diphosphatase -
  M8332_RS01590 (M8332_01590) radA 336400..337782 (+) 1383 WP_252780436.1 DNA repair protein RadA Machinery gene
  M8332_RS01595 (M8332_01595) gltX 337864..339357 (+) 1494 WP_252780437.1 glutamate--tRNA ligase -
  M8332_RS01600 (M8332_01600) cysS 339466..340878 (+) 1413 WP_252780438.1 cysteine--tRNA ligase -
  M8332_RS01605 (M8332_01605) - 340884..341309 (+) 426 WP_252780439.1 Mini-ribonuclease 3 -
  M8332_RS01610 (M8332_01610) rlmB 341299..342060 (+) 762 WP_252780440.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  M8332_RS01615 (M8332_01615) - 342084..342608 (+) 525 WP_252780441.1 NYN domain-containing protein -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49687.92 Da        Isoelectric Point: 6.1867

>NTDB_id=689671 M8332_RS01590 WP_252780436.1 336400..337782(+) (radA) [Fructilactobacillus ixorae strain Ru20-1]
MSKTITQFVCANCGYISPSYLGRCPNCGEWNTFTEETKSKSDSTSGAKTRVSLHGNRVTPQLITEVDAQDAPRYQIQSAE
LNRVLGGGIVPGSLVLIGGDPGIGKSTLLLQVSGQLAMLGKRVLYVTGEESADQVKMRSDRLHITTNERVYVFPETDMTA
VRDAIADLKPDVVIVDSVQTMQEGDVDSAIGSVSQVRGVTTDLMGIAKTNNITVFIVGHVTKGGALAGPKTLEHMVDTVL
YFEGDKHHSYRLLRAVKNRFGSTNELGIFEMADQGLQEVQNPSEIFLEERLQNATGSAIVVAMEGTRPILVELQALITPS
VFGNAQRTATGVDRNRVSLIMAVLEKRAGLLLQNQDAYVKAAGGVKLNEPALDLAMAVSIASSYENISTNPRECYVGELG
LTGEVRRVDRIEQRIREAAKLGFVRILVPKHSLEGLTVPIGIEVVGVTTLKEALQLALPK

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=689671 M8332_RS01590 WP_252780436.1 336400..337782(+) (radA) [Fructilactobacillus ixorae strain Ru20-1]
ATGAGTAAAACCATCACTCAATTTGTGTGTGCAAACTGTGGTTACATTTCTCCTAGTTACTTAGGTCGTTGTCCTAACTG
TGGGGAGTGGAATACGTTTACAGAAGAAACAAAGTCCAAATCCGACTCGACTAGTGGAGCAAAGACGCGGGTTTCTCTGC
ACGGCAACCGGGTGACTCCACAACTGATCACCGAGGTGGATGCCCAGGATGCGCCTCGCTATCAGATTCAATCCGCAGAA
CTAAACCGGGTCCTTGGGGGTGGAATCGTGCCCGGCTCCCTTGTCTTAATTGGGGGCGATCCCGGCATTGGAAAGTCGAC
CTTACTCCTGCAAGTGTCTGGCCAGTTAGCAATGCTGGGAAAACGGGTGTTGTACGTGACTGGGGAAGAAAGTGCGGACC
AGGTGAAAATGCGGTCCGATCGCTTGCATATCACCACGAACGAGCGGGTGTATGTCTTTCCAGAAACCGACATGACGGCG
GTCCGGGATGCCATTGCTGATTTAAAGCCAGACGTTGTCATCGTGGATTCGGTCCAAACCATGCAGGAGGGCGACGTTGA
CTCGGCGATTGGGTCGGTCTCACAGGTTCGGGGGGTCACCACTGACTTGATGGGGATTGCGAAGACCAATAACATCACCG
TCTTTATCGTGGGGCACGTCACCAAGGGGGGCGCGCTTGCGGGGCCGAAAACCTTGGAACACATGGTGGACACGGTGCTG
TATTTTGAGGGCGATAAGCACCATTCCTACCGTCTGTTACGGGCGGTTAAGAACCGGTTTGGATCGACTAACGAACTCGG
GATTTTTGAAATGGCCGATCAGGGACTGCAGGAGGTTCAAAATCCCTCAGAAATTTTTCTGGAGGAACGCTTGCAAAATG
CGACCGGTTCGGCCATTGTGGTGGCTATGGAAGGAACCCGGCCCATTTTGGTTGAACTCCAGGCCCTCATCACGCCGTCG
GTCTTTGGAAATGCCCAACGGACGGCGACGGGCGTGGATCGCAACCGGGTGTCGTTGATCATGGCCGTGTTAGAAAAACG
GGCCGGGTTACTACTCCAAAATCAGGATGCCTACGTTAAGGCCGCGGGTGGCGTGAAGTTAAATGAACCCGCGCTTGACC
TAGCCATGGCCGTCAGCATTGCTTCCAGTTATGAAAATATCAGTACGAACCCACGTGAGTGTTACGTCGGTGAACTGGGG
TTGACCGGAGAAGTTCGCCGGGTTGACCGGATCGAACAACGGATTCGAGAAGCCGCCAAACTGGGTTTTGTTCGGATTTT
GGTGCCGAAGCATAGCTTGGAAGGACTCACCGTGCCGATCGGAATTGAAGTGGTCGGCGTTACCACCCTCAAAGAGGCGT
TACAGCTCGCGCTTCCCAAGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(364-431)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(74-224)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

64.396

98.913

0.637
  radA Streptococcus pneumoniae Rx1

64.396

98.913

0.637
  radA Streptococcus pneumoniae D39

64.396

98.913

0.637
  radA Streptococcus pneumoniae R6

64.396

98.913

0.637
  radA Streptococcus pneumoniae TIGR4

64.396

98.913

0.637
  radA Streptococcus mitis NCTC 12261

64.396

98.913

0.637
  radA Bacillus subtilis subsp. subtilis str. 168

60.48

99.565

0.602