Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   OTU45_RS03305 Genome accession   NZ_CP113114
Coordinates   654526..654792 (+) Length   88 a.a.
NCBI ID   WP_001808618.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain NP1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 649526..659792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OTU45_RS03285 (OTU45_03285) - 649737..650246 (+) 510 WP_000619941.1 GNAT family N-acetyltransferase -
  OTU45_RS03290 (OTU45_03290) pheT 650323..652728 (+) 2406 WP_050280918.1 phenylalanine--tRNA ligase subunit beta -
  OTU45_RS03295 (OTU45_03295) - 652796..653797 (-) 1002 WP_050280917.1 endonuclease/exonuclease/phosphatase family protein -
  OTU45_RS03300 (OTU45_03300) - 653953..654400 (+) 448 Protein_648 transposase -
  OTU45_RS03305 (OTU45_03305) HI0659 654526..654792 (+) 267 WP_001808618.1 helix-turn-helix domain-containing protein Machinery gene
  OTU45_RS03310 (OTU45_03310) metE 655053..657302 (+) 2250 WP_050280916.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  OTU45_RS03315 (OTU45_03315) metF 657366..658232 (+) 867 WP_000089965.1 methylenetetrahydrofolate reductase [NAD(P)H] -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9622.15 Da        Isoelectric Point: 4.4893

>NTDB_id=689655 OTU45_RS03305 WP_001808618.1 654526..654792(+) (HI0659) [Streptococcus pneumoniae strain NP1]
MEGCPSELFSKEEILESDMRVAIMSELIEARYEQGISQKKLEEVSGISQPVIARMETGKTSPQLDTVLKVLASLGKTLAI
VPLEQGKS

Nucleotide


Download         Length: 267 bp        

>NTDB_id=689655 OTU45_RS03305 WP_001808618.1 654526..654792(+) (HI0659) [Streptococcus pneumoniae strain NP1]
TTGGAAGGATGTCCATCTGAGCTCTTTAGCAAGGAGGAAATCCTTGAAAGTGATATGCGAGTGGCTATCATGAGCGAGTT
GATTGAGGCTAGGTATGAACAAGGAATCAGTCAGAAAAAGCTGGAAGAAGTCAGTGGAATAAGCCAGCCTGTCATAGCTA
GGATGGAGACAGGAAAGACTAGTCCTCAGTTGGATACAGTTTTAAAAGTCCTAGCCAGTTTAGGAAAGACACTAGCAATC
GTCCCACTTGAACAGGGAAAAAGTTGA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(29-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

61.039

87.5

0.534