Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   OTU45_RS00460 Genome accession   NZ_CP113114
Coordinates   84654..85424 (+) Length   256 a.a.
NCBI ID   WP_000616157.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain NP1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 79654..90424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OTU45_RS00445 (OTU45_00445) - 81709..82146 (+) 438 WP_000076479.1 CoA-binding protein -
  OTU45_RS00450 (OTU45_00450) - 82329..83339 (-) 1011 WP_000009157.1 YeiH family protein -
  OTU45_RS00455 (OTU45_00455) - 83488..84657 (+) 1170 WP_000366343.1 pyridoxal phosphate-dependent aminotransferase -
  OTU45_RS00460 (OTU45_00460) recO 84654..85424 (+) 771 WP_000616157.1 DNA repair protein RecO Machinery gene
  OTU45_RS00465 (OTU45_00465) plsX 85421..86413 (+) 993 WP_000717456.1 phosphate acyltransferase PlsX -
  OTU45_RS00470 (OTU45_00470) - 86419..86652 (+) 234 WP_000136447.1 acyl carrier protein -
  OTU45_RS00475 (OTU45_00475) - 86689..86988 (+) 300 Protein_82 transposase family protein -
  OTU45_RS00480 (OTU45_00480) blpU 87191..87421 (+) 231 WP_001093076.1 bacteriocin-like peptide BlpU -
  OTU45_RS00485 (OTU45_00485) - 87424..87549 (+) 126 WP_000346297.1 PncF family bacteriocin immunity protein -
  OTU45_RS00490 (OTU45_00490) - 87986..89332 (+) 1347 WP_001826500.1 IS1380-like element ISSpn5 family transposase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29735.24 Da        Isoelectric Point: 5.1580

>NTDB_id=689634 OTU45_RS00460 WP_000616157.1 84654..85424(+) (recO) [Streptococcus pneumoniae strain NP1]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQVGKCMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELMEAGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRVG
QAFDFSFKYGACLCPEHYHEDERRCHLNPNIPYLLNQFQAIDFETLETISLKPGIKQELRQFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEKK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=689634 OTU45_RS00460 WP_000616157.1 84654..85424(+) (recO) [Streptococcus pneumoniae strain NP1]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTTTACAATCGCAATTTTCGTGAGGATGACAAGCTTGTCAAAATTTT
TACAGAGCAGGTTGGCAAATGCATGTTTTTTGTCAAACACGCTGGTCAGTCTAAGCTGGCGCCTGTTATTCAGCCCTTGG
TGCTGGCACGATTTCTCTTGCGAATCAATGATGACGGACTCAGTTACATCGAAGACTATCATGAGGTCATGACTTTTCCC
AAGATTAATAGTGACCTCTTTGTCATGGCCTATGCGACCTATGTGGCAGCTCTTGCAGATGCTAGTTTGCAGGACAATCA
GCAGGATGCTCCCTTGTTTGCTTTTTTGCAAAAGACTTTGGAGTTGATGGAAGCAGGCTTGGATTATCAGGTTTTGACCA
ATATTTTTGAAATTCAAATTTTGACTCGATTTGGAATCAGCCTCAATTTTAATGAGTGTGTCTTCTGCCATCGGGTTGGT
CAGGCTTTTGACTTTTCTTTCAAATATGGAGCCTGTCTCTGTCCAGAGCATTATCATGAGGATGAGAGACGTTGCCATCT
CAATCCCAATATCCCCTATCTGCTCAATCAATTTCAAGCTATTGATTTTGAGACTTTGGAGACCATTTCGCTCAAGCCTG
GAATCAAGCAAGAGCTACGCCAATTTATGGATCAACTATATGAAGAGTACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAAAGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(4-72)

Recombination protein O C terminal (RecO_C)

(84-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

99.219

100

0.992