Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   M8X21_RS07835 Genome accession   NZ_CP097467
Coordinates   1476595..1476879 (+) Length   94 a.a.
NCBI ID   WP_024085249.1    Uniprot ID   -
Organism   Bacillus velezensis strain HMB26553     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1471595..1481879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8X21_RS07815 (M8X21_07815) - 1472853..1473749 (+) 897 WP_029973683.1 ketopantoate reductase family protein -
  M8X21_RS07820 (M8X21_07820) - 1473778..1475010 (-) 1233 WP_007409644.1 aminopeptidase -
  M8X21_RS07825 (M8X21_07825) - 1475111..1475245 (-) 135 WP_003154559.1 protein YkpC -
  M8X21_RS07830 (M8X21_07830) mreBH 1475317..1476324 (-) 1008 WP_014417632.1 cell shape-determining protein MreBH -
  M8X21_RS07835 (M8X21_07835) abrB 1476595..1476879 (+) 285 WP_024085249.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  M8X21_RS07840 (M8X21_07840) - 1477052..1478356 (+) 1305 WP_014417634.1 ATP-binding protein -
  M8X21_RS07845 (M8X21_07845) - 1478358..1479185 (+) 828 WP_029973684.1 gamma-glutamylcyclotransferase family protein -
  M8X21_RS07850 (M8X21_07850) ktrC 1479226..1479891 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  M8X21_RS07855 (M8X21_07855) ade 1480040..1481773 (+) 1734 WP_029973685.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10574.41 Da        Isoelectric Point: 5.2271

>NTDB_id=689623 M8X21_RS07835 WP_024085249.1 1476595..1476879(+) (abrB) [Bacillus velezensis strain HMB26553]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITSENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=689623 M8X21_RS07835 WP_024085249.1 1476595..1476879(+) (abrB) [Bacillus velezensis strain HMB26553]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACCTCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543