Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   M5J13_RS00770 Genome accession   NZ_CP097457
Coordinates   153911..154414 (+) Length   167 a.a.
NCBI ID   WP_252837419.1    Uniprot ID   -
Organism   Buchnera aphidicola (Periphyllus lyropictus) strain Pl-LLN     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 148911..159414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5J13_RS00745 (M5J13_00745) hemW 148961..150097 (-) 1137 WP_252837414.1 radical SAM family heme chaperone HemW -
  M5J13_RS00750 (M5J13_00750) ruvX 150249..150686 (-) 438 WP_252837415.1 Holliday junction resolvase RuvX -
  M5J13_RS00755 (M5J13_00755) - 150697..151266 (-) 570 WP_252837416.1 YqgE/AlgH family protein -
  M5J13_RS00760 (M5J13_00760) dnaB 151430..152827 (-) 1398 WP_252837417.1 replicative DNA helicase -
  M5J13_RS00765 (M5J13_00765) dusA 152851..153810 (-) 960 WP_252837418.1 tRNA dihydrouridine(20/20a) synthase DusA -
  M5J13_RS00770 (M5J13_00770) ssb 153911..154414 (+) 504 WP_252837419.1 single-stranded DNA-binding protein Machinery gene
  M5J13_RS00775 (M5J13_00775) - 154511..155263 (-) 753 WP_252837420.1 alpha/beta fold hydrolase -
  M5J13_RS00780 (M5J13_00780) - 155390..155965 (+) 576 WP_252837421.1 NifU family protein -
  M5J13_RS00785 (M5J13_00785) ansA 156027..157031 (-) 1005 WP_252837422.1 asparaginase -
  M5J13_RS00790 (M5J13_00790) - 157249..158835 (+) 1587 WP_252837423.1 peptide chain release factor 3 -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 19310.74 Da        Isoelectric Point: 9.7346

>NTDB_id=689547 M5J13_RS00770 WP_252837419.1 153911..154414(+) (ssb) [Buchnera aphidicola (Periphyllus lyropictus) strain Pl-LLN]
MASRGINKVILIGYLGQDPDIRYMTNGSAVANINIATSESWKDKNTNEIRERTEWHKVVLFGKLAEISGEYLKKGSQVYI
EGSLQTRKWKDKNNLERYTTEIIVNINGSMQMLGNRNNFSKFKDNNLSNYKEKSNLKKKNKYSLNNSNKKLLLDDESNTD
YEDDIPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=689547 M5J13_RS00770 WP_252837419.1 153911..154414(+) (ssb) [Buchnera aphidicola (Periphyllus lyropictus) strain Pl-LLN]
ATGGCTAGTAGAGGAATTAATAAAGTAATTTTAATAGGTTATCTTGGTCAAGATCCAGATATTCGTTATATGACTAATGG
ATCAGCTGTAGCAAATATTAATATAGCTACTTCAGAAAGTTGGAAAGATAAAAATACTAATGAAATTCGAGAAAGAACTG
AATGGCATAAGGTAGTTTTATTTGGAAAGTTAGCAGAAATTTCAGGAGAATATTTAAAAAAAGGATCTCAAGTATATATT
GAAGGTTCTTTACAAACTAGAAAATGGAAAGATAAAAATAATTTAGAAAGATATACTACAGAAATAATTGTTAATATTAA
TGGATCTATGCAAATGTTGGGAAATAGAAATAATTTTTCTAAATTTAAAGATAATAATTTAAGTAATTATAAAGAAAAAT
CTAATTTAAAAAAAAAAAATAAATATTCTTTAAATAATTCCAATAAAAAATTATTATTAGATGACGAATCAAATACAGAT
TATGAAGATGATATTCCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.847

100

0.539
  ssb Glaesserella parasuis strain SC1401

43.094

100

0.467
  ssb Neisseria meningitidis MC58

39.205

100

0.413
  ssb Neisseria gonorrhoeae MS11

38.636

100

0.407