Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   M8Y67_RS14305 Genome accession   NZ_CP097426
Coordinates   2906740..2907369 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain C289     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2901740..2912369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8Y67_RS14290 (M8Y67_14290) helD 2901982..2904036 (-) 2055 WP_001295354.1 DNA helicase IV -
  M8Y67_RS14295 (M8Y67_14295) yccF 2904159..2904605 (+) 447 WP_001261235.1 YccF domain-containing protein -
  M8Y67_RS14300 (M8Y67_14300) yccS 2904615..2906777 (+) 2163 WP_000875058.1 YccS family putative transporter -
  M8Y67_RS14305 (M8Y67_14305) sxy/tfoX 2906740..2907369 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  M8Y67_RS14310 (M8Y67_14310) sulA 2907588..2908097 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  M8Y67_RS14315 (M8Y67_14315) ompA 2908454..2909494 (+) 1041 WP_001400178.1 porin OmpA -
  M8Y67_RS14320 (M8Y67_14320) matP 2909570..2910022 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  M8Y67_RS14325 (M8Y67_14325) ycbZ 2910208..2911968 (+) 1761 WP_000152888.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=689514 M8Y67_RS14305 WP_000839153.1 2906740..2907369(-) (sxy/tfoX) [Escherichia coli strain C289]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=689514 M8Y67_RS14305 WP_000839153.1 2906740..2907369(-) (sxy/tfoX) [Escherichia coli strain C289]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1