Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   UtA1_RS10640 Genome accession   NZ_AP018335
Coordinates   2208210..2209928 (+) Length   572 a.a.
NCBI ID   WP_096550976.1    Uniprot ID   -
Organism   Ureibacillus thermosphaericus strain A1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2203210..2214928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UtA1_RS10615 - 2203712..2203939 (+) 228 WP_016837752.1 exodeoxyribonuclease VII small subunit -
  UtA1_RS10620 - 2203944..2204828 (+) 885 WP_016837753.1 polyprenyl synthetase family protein -
  UtA1_RS10625 dxs 2204921..2206822 (+) 1902 WP_096550974.1 1-deoxy-D-xylulose-5-phosphate synthase -
  UtA1_RS10630 - 2206819..2207637 (+) 819 WP_096550975.1 TlyA family RNA methyltransferase -
  UtA1_RS10635 ahrC 2207745..2208194 (+) 450 WP_016837756.1 transcriptional regulator AhrC/ArgR -
  UtA1_RS10640 recN 2208210..2209928 (+) 1719 WP_096550976.1 DNA repair protein RecN Machinery gene
  UtA1_RS10645 - 2210074..2211030 (+) 957 WP_096550977.1 SpoIVB peptidase S55 domain-containing protein -
  UtA1_RS10650 spo0A 2211295..2212086 (+) 792 WP_016837760.1 sporulation transcription factor Spo0A -
  UtA1_RS10655 - 2212249..2213814 (+) 1566 WP_096550978.1 FapA family protein -
  UtA1_RS10660 - 2213871..2214131 (-) 261 WP_016837762.1 DUF2627 domain-containing protein -

Sequence

Protein


Download         Length: 572 a.a.        Molecular weight: 65361.32 Da        Isoelectric Point: 4.8708

>NTDB_id=68947 UtA1_RS10640 WP_096550976.1 2208210..2209928(+) (recN) [Ureibacillus thermosphaericus strain A1]
MLKELNIRNFAIIDELTVYFNDGLTVLTGETGAGKSIIIDAVHLLAGGRASQEFVRHGAKKAELTGLFFVSDNHPVFEKL
SDAGIDHEEGTIILRRDINENGKSVCRVNGKLVTLSILRDIGSTLVDIHGQHESQELMDEKCHIDLLDQFAEKQIQPIKD
KYHRLYHEYRLLKKEVDAINIDEQQTAQRIDLYQFQIQELEDAKLSEKEEEALLEERKRLQNFHKIYERAIHAYDAISGE
LKGLDCIGEAMSALEDIVSLDEQFHDSFEAVSSSFYALQDASYQIKNIIDELEFDPERLNEIESRLAQYQMMKRKYGSTV
KEIITYYEKIKEELNTLLNRDEAIQQKEQDLRKMESELDQLCDELTKVRKKCAGILSEAIMNELRDLHMEKAKFIVQFER
LNNFDINGKDYISFYISTNVGEPPKSLPKIASGGELSRIMLALKTIFSSKSQITSIIFDEVDTGVSGRVAQAIAEKIANI
SFNSQVLCISHLPQVAAMADQHYLISKQVEQNRTFTTVQVIENDTRVEEISRMMSGTEITELTLQHARELLQLALIKKNE
IKEQLKSSTSMQ

Nucleotide


Download         Length: 1719 bp        

>NTDB_id=68947 UtA1_RS10640 WP_096550976.1 2208210..2209928(+) (recN) [Ureibacillus thermosphaericus strain A1]
TTGTTGAAAGAGCTGAATATACGTAATTTCGCCATTATCGACGAATTAACCGTTTACTTTAATGATGGATTAACCGTTCT
AACAGGTGAAACAGGAGCCGGAAAGTCCATCATTATCGATGCTGTTCATTTGTTAGCTGGTGGACGAGCAAGTCAAGAAT
TTGTGCGACACGGTGCAAAAAAAGCGGAATTAACGGGTTTGTTTTTTGTTTCCGACAATCATCCTGTTTTTGAAAAATTA
TCTGATGCCGGTATAGACCATGAAGAAGGTACCATTATATTACGGAGAGATATTAATGAAAACGGAAAAAGCGTATGTCG
AGTTAATGGAAAACTTGTTACATTATCAATTTTACGTGATATCGGCTCCACGTTAGTGGATATTCATGGACAACATGAAA
GCCAAGAATTAATGGATGAGAAGTGCCATATCGATTTACTTGATCAATTTGCGGAAAAACAAATCCAGCCAATCAAAGAC
AAATATCATCGCCTCTATCATGAATATCGTCTATTAAAAAAAGAAGTCGATGCCATCAATATCGATGAACAACAGACAGC
TCAACGTATTGATTTGTATCAATTCCAAATTCAAGAGCTAGAAGATGCAAAATTATCAGAAAAAGAAGAAGAGGCTTTAC
TTGAAGAACGGAAACGATTGCAAAATTTTCATAAGATTTATGAACGAGCCATTCATGCATACGATGCAATTTCTGGAGAA
TTAAAAGGACTAGATTGTATTGGAGAAGCGATGAGCGCTTTGGAAGATATCGTTTCATTAGATGAGCAATTTCATGATTC
CTTTGAAGCTGTATCATCTTCATTCTATGCGTTGCAAGATGCTTCATATCAAATCAAAAATATCATTGATGAACTTGAAT
TTGACCCTGAACGATTAAATGAAATAGAATCACGGCTTGCACAATATCAAATGATGAAACGAAAATATGGAAGTACCGTA
AAAGAGATTATTACATATTATGAAAAAATTAAAGAAGAACTAAACACACTATTAAATCGAGATGAAGCTATTCAACAAAA
AGAACAAGATTTAAGAAAAATGGAATCTGAATTAGACCAATTGTGTGATGAATTAACGAAAGTTCGAAAAAAATGTGCAG
GTATATTGAGTGAAGCCATAATGAATGAGCTTCGTGATTTACATATGGAAAAAGCGAAATTTATCGTTCAGTTTGAGCGT
TTAAATAATTTCGACATAAATGGGAAAGACTATATATCATTCTATATATCCACCAATGTAGGAGAACCTCCTAAATCTTT
GCCAAAAATTGCATCCGGTGGAGAATTATCGAGAATAATGCTTGCATTAAAAACCATTTTTTCATCGAAATCTCAAATTA
CATCCATCATTTTTGATGAAGTGGATACAGGTGTAAGCGGCCGCGTTGCACAGGCAATTGCTGAAAAAATCGCCAATATT
TCATTCAATTCACAAGTATTATGCATTTCTCATTTGCCTCAAGTTGCAGCAATGGCAGATCAGCATTACTTAATATCAAA
ACAAGTTGAACAAAACCGTACTTTTACGACAGTTCAAGTAATTGAAAATGATACACGGGTAGAAGAAATTAGTCGCATGA
TGAGTGGAACTGAAATTACAGAATTAACGTTGCAACATGCGCGAGAATTATTGCAATTGGCACTTATAAAGAAAAATGAA
ATCAAAGAACAATTAAAAAGTTCTACCTCGATGCAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

51.494

99.476

0.512

Multiple sequence alignment