Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OSU72_RS18710 Genome accession   NZ_CP113103
Coordinates   4255944..4256942 (+) Length   332 a.a.
NCBI ID   WP_003950213.1    Uniprot ID   A0ABR4S5E1
Organism   Streptomyces sp. NA13     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 4250944..4261942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSU72_RS18685 (OSU72_18685) - 4251355..4252002 (+) 648 WP_267812664.1 TetR/AcrR family transcriptional regulator -
  OSU72_RS18690 (OSU72_18690) - 4252167..4253732 (+) 1566 WP_267812666.1 MFS transporter -
  OSU72_RS18695 (OSU72_18695) - 4253770..4254288 (-) 519 WP_003950210.1 MarR family winged helix-turn-helix transcriptional regulator -
  OSU72_RS18700 (OSU72_18700) - 4254398..4255180 (+) 783 WP_267812667.1 dioxygenase -
  OSU72_RS18705 (OSU72_18705) - 4255225..4255770 (-) 546 WP_033240428.1 GNAT family N-acetyltransferase -
  OSU72_RS18710 (OSU72_18710) rpoS 4255944..4256942 (+) 999 WP_003950213.1 sigma-70 family RNA polymerase sigma factor Regulator
  OSU72_RS18715 (OSU72_18715) - 4257307..4258059 (-) 753 WP_033240427.1 DUF6227 family protein -
  OSU72_RS18720 (OSU72_18720) - 4258497..4259651 (-) 1155 WP_267812668.1 P1 family peptidase -
  OSU72_RS18725 (OSU72_18725) - 4259777..4261000 (-) 1224 WP_085478238.1 low temperature requirement protein A -
  OSU72_RS18730 (OSU72_18730) - 4261222..4261401 (+) 180 WP_267812670.1 hypothetical protein -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 36769.27 Da        Isoelectric Point: 4.6701

>NTDB_id=689408 OSU72_RS18710 WP_003950213.1 4255944..4256942(+) (rpoS) [Streptomyces sp. NA13]
MATRAVARRQPAASGETGAAGSVRATGEIADRDLVGMYLDEIARTPLLDAAKEVELSQTIEAGVYAGKILDGEVDSDSAG
ASREELEALVAEGERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQAI
TRSIADQSRTIRLPVHLVEELGRIRRVQREFNRENGRDPEPAEIAAELSSTPERVTDVLDWARDPVSLNMSVDDEGETQF
GDLLEDTSAVSPEQSVLTLLRSEELDDLIGQLDDRTASIIKMRYGIEDGRERTLTEVGKQHGLTRERIRQIEKHALLELK
RMAHDTGFDAAA

Nucleotide


Download         Length: 999 bp        

>NTDB_id=689408 OSU72_RS18710 WP_003950213.1 4255944..4256942(+) (rpoS) [Streptomyces sp. NA13]
ATGGCAACCCGTGCCGTCGCCCGTCGTCAGCCCGCCGCCTCCGGCGAGACCGGCGCGGCAGGCAGCGTCCGCGCGACCGG
CGAGATCGCCGACCGCGACCTTGTGGGCATGTATCTCGACGAGATCGCCCGCACACCGCTGCTGGACGCCGCGAAGGAAG
TGGAGCTGTCCCAGACCATCGAGGCCGGTGTCTACGCCGGGAAGATCCTCGACGGAGAGGTCGACAGCGACTCCGCCGGA
GCTTCCCGCGAGGAGCTGGAAGCCCTCGTCGCCGAGGGGGAGCGGGCCAAGGACGTCTTCATCCGGTCCAACCTCCGCCT
CGTCGTAGCCGTGGCCCGCCGCTACCCACGCAGCGGCCTCCCCCTGCTCGACCTCATCCAGGAGGGGAACGCCGGCCTGG
TCCGCGCAGTCGAGAAGTTCGACTACGCCAAGGGCTTCAAGTTCTCCACGTACGCCACCTGGTGGATCAGGCAGGCCATC
ACCCGCTCCATCGCGGACCAGTCCCGCACCATCCGGCTCCCCGTCCACCTCGTGGAGGAGCTGGGCCGCATCCGCCGCGT
CCAGCGCGAGTTCAACCGCGAGAACGGCCGGGACCCCGAGCCCGCCGAGATCGCGGCCGAGCTGAGCAGCACCCCCGAGC
GCGTCACCGACGTCCTCGACTGGGCCCGCGACCCGGTTTCGCTCAACATGTCGGTGGACGACGAGGGCGAGACCCAGTTC
GGCGACCTCCTGGAGGACACCTCCGCGGTCTCCCCCGAGCAGTCCGTCCTGACCCTGCTGCGCAGCGAGGAGCTCGACGA
CCTCATCGGCCAGCTCGACGACCGCACCGCCTCCATCATCAAGATGCGGTACGGCATCGAGGACGGCCGCGAGCGCACCC
TCACCGAGGTCGGCAAGCAGCACGGCCTGACCCGCGAGCGCATCCGCCAGATAGAGAAGCACGCGCTCCTGGAGCTCAAG
CGCATGGCGCACGACACCGGATTCGACGCAGCGGCCTGA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(179-255)

Sigma-70 region 2 (Sigma70_r2)

(100-169)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(33-66)

Sigma-70, region 4 (Sigma70_r4)

(269-320)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

38.17

95.482

0.364