Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OSU72_RS07380 Genome accession   NZ_CP113103
Coordinates   1758508..1760424 (-) Length   638 a.a.
NCBI ID   WP_267811795.1    Uniprot ID   -
Organism   Streptomyces sp. NA13     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1753508..1765424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSU72_RS07360 (OSU72_07360) - 1753627..1754889 (+) 1263 WP_071337755.1 NAD(P)/FAD-dependent oxidoreductase -
  OSU72_RS07365 (OSU72_07365) dnaG 1755010..1756914 (+) 1905 WP_008405563.1 DNA primase -
  OSU72_RS07370 (OSU72_07370) rpoS 1757112..1758185 (+) 1074 WP_008405566.1 RNA polymerase sigma factor Regulator
  OSU72_RS07375 (OSU72_07375) - 1758202..1758417 (-) 216 WP_003947903.1 hypothetical protein -
  OSU72_RS07380 (OSU72_07380) rcrQ 1758508..1760424 (-) 1917 WP_267811795.1 ABC transporter ATP-binding protein Regulator
  OSU72_RS07385 (OSU72_07385) rcrP 1760424..1762157 (-) 1734 WP_267811796.1 ABC transporter ATP-binding protein Regulator
  OSU72_RS07390 (OSU72_07390) - 1762291..1763745 (-) 1455 WP_008405577.1 xylulokinase -
  OSU72_RS07395 (OSU72_07395) - 1763835..1764134 (-) 300 WP_003947907.1 hypothetical protein -
  OSU72_RS07415 (OSU72_07415) - 1764842..1765294 (-) 453 WP_267811797.1 hypothetical protein -

Sequence

Protein


Download         Length: 638 a.a.        Molecular weight: 68768.86 Da        Isoelectric Point: 4.8614

>NTDB_id=689385 OSU72_RS07380 WP_267811795.1 1758508..1760424(-) (rcrQ) [Streptomyces sp. NA13]
MAGPMGAGAPGQQSMDFKGSGKRLLARFRPEKKVLWAMLATGLVSVALSVTGPKILGWATDLVFAGIVGRDMPAGATREQ
VLAGMREGGDDGVADMLSGMDFTPGQGIDFGAVGEVLLLALGVFLLASALMAVSARLSNRAINRTVFRMRRDVQTKLSRL
PLSYFDQRQRGEVLSRATNDIDNIGQTLQQTMGQVVNSLLTVIGVLVMMFWISPLLALVALVTVPLSFVVATRVGKRSQP
HFVSQWSSTGTLNAHIEEMYTGHSLVKVFGRQDESAERFAEENDALYQASFKAQFTSGIMQPLMMFVSNFNYVLVAVVGG
LRVASGALSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERVFELLDADEQEPDPVPGARLEKPLGRVALEKVSF
RYEPDRPLIEDLSLTVEPGRTVAIVGPTGAGKTTLVNLLMRFYEVTGGRITLDGVEIAAMAREDLRSLIGMVLQDTWLFG
GTIAENIAYGASREVSREEVEEAARAAHADRFVRTLPDGYDTVLDDEGSGVSAGEKQLVTIARAFLSDPVILVLDEATSS
VDTRTEVLIQQAMARLAHGRTSFVIAHRLSTIRDADTILVMENGAIVEQGSHTELLAAEGAYARLYAAQFAEAAVEVD

Nucleotide


Download         Length: 1917 bp        

>NTDB_id=689385 OSU72_RS07380 WP_267811795.1 1758508..1760424(-) (rcrQ) [Streptomyces sp. NA13]
ATGGCGGGCCCGATGGGCGCGGGAGCGCCGGGACAGCAGTCGATGGACTTCAAGGGTTCGGGCAAGAGGCTGCTGGCCCG
GTTCCGCCCCGAGAAGAAGGTGCTGTGGGCGATGCTCGCCACCGGCCTGGTCAGCGTGGCGCTCTCGGTGACCGGCCCGA
AGATCCTCGGCTGGGCCACCGACCTGGTCTTCGCGGGCATCGTCGGCCGCGACATGCCGGCCGGCGCCACCCGCGAGCAG
GTGCTGGCGGGGATGCGCGAGGGCGGCGACGACGGCGTGGCCGACATGCTCTCCGGAATGGACTTCACCCCCGGCCAGGG
CATCGACTTCGGTGCCGTCGGCGAGGTGCTGCTGCTGGCGCTCGGCGTCTTCCTGCTGGCCAGCGCCCTGATGGCGGTCT
CGGCCCGGCTGAGCAACCGCGCGATCAACCGCACCGTCTTCCGGATGCGCCGCGACGTGCAGACCAAGCTGTCGCGGCTC
CCGCTCTCCTACTTCGACCAGCGCCAGCGCGGTGAGGTGCTCAGCCGCGCCACCAACGACATCGACAACATCGGCCAGAC
GCTCCAGCAGACGATGGGCCAGGTGGTCAACTCGCTGCTGACCGTCATCGGTGTGCTGGTGATGATGTTCTGGATATCGC
CGCTGCTCGCCCTGGTGGCGCTGGTGACGGTGCCGCTCTCCTTCGTGGTCGCCACCCGGGTCGGCAAGCGCTCCCAGCCG
CACTTCGTCAGCCAGTGGTCCTCCACGGGCACGCTCAACGCCCACATCGAGGAGATGTACACCGGCCACAGCCTGGTCAA
GGTCTTCGGCCGCCAGGACGAGTCGGCCGAGCGGTTCGCCGAGGAGAACGATGCGCTCTACCAGGCGTCCTTCAAGGCCC
AGTTCACCAGCGGCATCATGCAGCCGCTGATGATGTTCGTCTCCAACTTCAACTACGTGCTGGTCGCCGTCGTCGGCGGC
CTCCGGGTCGCCTCGGGCGCCCTGTCCATCGGCGACGTGCAGGCGTTCATCCAGTACTCCCGGCAGTTCTCGATGCCGCT
GACCCAGGTCGCCTCGATGGCCAACCTGGTGCAGTCCGGCGTCGCCTCCGCCGAGCGGGTCTTCGAACTCCTCGACGCCG
ACGAGCAGGAGCCCGACCCGGTCCCCGGCGCCCGCCTGGAGAAGCCGCTGGGCCGCGTCGCCCTGGAGAAGGTCTCCTTC
CGCTACGAGCCGGACCGGCCCCTGATCGAGGACCTCTCCCTGACCGTCGAGCCGGGCCGCACGGTCGCCATCGTCGGCCC
GACCGGCGCCGGCAAGACCACCCTGGTCAACCTGCTGATGCGGTTCTACGAGGTCACCGGCGGCCGGATCACCCTGGACG
GCGTGGAGATCGCCGCCATGGCCCGGGAGGACCTGCGCTCCCTGATCGGCATGGTCCTCCAGGACACCTGGCTGTTCGGC
GGCACCATCGCGGAGAACATCGCCTACGGCGCCTCCCGCGAGGTCAGCCGCGAGGAGGTCGAGGAGGCGGCCCGCGCCGC
CCACGCCGACCGCTTCGTCCGCACGCTCCCCGACGGCTACGACACCGTCCTGGACGACGAGGGCAGCGGGGTCAGCGCCG
GGGAGAAGCAGCTCGTCACCATCGCGCGGGCCTTCCTCTCCGACCCGGTGATCCTCGTCCTGGACGAGGCCACCAGCTCG
GTGGACACCCGTACCGAGGTGCTGATCCAGCAGGCCATGGCCCGGCTCGCGCACGGCCGGACCTCCTTCGTCATCGCCCA
CCGCCTCTCCACGATCCGGGACGCCGACACGATCCTGGTGATGGAGAACGGGGCCATCGTCGAGCAGGGCTCGCACACCG
AACTCCTCGCCGCCGAGGGGGCGTACGCCCGCCTCTACGCGGCCCAGTTCGCCGAGGCGGCCGTCGAGGTCGACTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(410-559)

ABC transporter transmembrane region (ABC_membrane)

(111-347)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

44.954

85.423

0.384