Detailed information NTG0689300

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: M5595_RS09260
• Genome accession: NZ_CP097376
• Coordinates: 1896303..1897664 (-)
• Length: 453 a.a.
• NCBI ID: WP_038352928.1
• Uniprot ID: -
• Organism: Eubacterium limosum strain B2
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1891303..1902664

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M5595_RS09225 (M5595_09225)	scfA	1891448..1891588 (-)	141	WP_013381915.1	six-cysteine ranthipeptide SCIFF	-
M5595_RS09230 (M5595_09230)	yajC	1891615..1892061 (-)	447	WP_038352923.1	preprotein translocase subunit YajC	-
M5595_RS09235 (M5595_09235)	tgt	1892080..1893189 (-)	1110	WP_038352924.1	tRNA guanosine(34) transglycosylase Tgt	-
M5595_RS09240 (M5595_09240)	queA	1893202..1894236 (-)	1035	WP_038352925.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
M5595_RS09245 (M5595_09245)	ruvB	1894247..1895275 (-)	1029	WP_038352926.1	Holliday junction branch migration DNA helicase RuvB	-
M5595_RS09250 (M5595_09250)	ruvA	1895287..1895898 (-)	612	WP_038352927.1	Holliday junction branch migration protein RuvA	-
M5595_RS09260 (M5595_09260)	radA	1896303..1897664 (-)	1362	WP_038352928.1	DNA repair protein RadA	Machinery gene
M5595_RS09265 (M5595_09265)	-	1897675..1898160 (-)	486	WP_038352929.1	VanZ family protein	-
M5595_RS09270 (M5595_09270)	-	1898229..1899278 (-)	1050	WP_052237325.1	PTS sugar transporter subunit IIC	-
M5595_RS09275 (M5595_09275)	-	1899546..1900187 (-)	642	WP_038352930.1	acetolactate decarboxylase	-
M5595_RS09280 (M5595_09280)	-	1900197..1901117 (-)	921	WP_038352931.1	CobW family GTP-binding protein	-
M5595_RS09285 (M5595_09285)	-	1901176..1902525 (-)	1350	WP_038352932.1	uroporphyrinogen decarboxylase family protein	-

Sequence

Protein

• Length: 453 a.a.
• Molecular weight: 50455.79 Da
• Isoelectric Point: 8.3461

>NTDB_id=689300 M5595_RS09260 WP_038352928.1 1896303..1897664(-) (radA) [Eubacterium limosum strain B2]
MAKLKKKFVCQNCGYSTPKWMGRCTECGEWNSFVEELDMPTEQGKKNTLERAVYTKPKRIEEIIPQKEDRFKTKNKELDR
VLGGGIVPGGVILLGGDPGIGKSTILLQTTENLGSQGLKILYISGEESEQQLKMRAVRMKVKSQNIFFLSEINVPYIVDT
ILNEKPDLVIIDSIQTMYSPTITSAPGSVSQIRENANALMQIAKKDNISMILVGHVTKEGNIAGPRVLEHMVDTVLYFEG
EKYHTYRILRGVKNRFGSTNEIGIFEMAQDGLHEVANPSEMMLSSRPKNTCGSVVVPCMEGTRPLLIELQGLVSQTSFGN
PRRMATGMDYNRMVLLLAIMEKRLGLQLQNLDAYINVVGGMKIDEPALDLAVVSVLYSSFRNFEIPEDMMIIGEVGLTGE
VRNIQHIEKRLKEGAKLGFKRCIMPKGNARGLENTGLELLPVDNISKALNILK

Nucleotide

• Length: 1362 bp

>NTDB_id=689300 M5595_RS09260 WP_038352928.1 1896303..1897664(-) (radA) [Eubacterium limosum strain B2]
ATGGCAAAATTAAAAAAGAAATTTGTGTGCCAGAACTGCGGGTACAGCACGCCTAAATGGATGGGGCGCTGTACGGAATG
CGGCGAATGGAACTCCTTTGTGGAGGAGCTGGATATGCCCACCGAGCAGGGAAAAAAGAATACCCTTGAACGGGCTGTGT
ACACAAAACCCAAGCGTATTGAAGAGATCATTCCTCAGAAAGAGGATCGTTTTAAAACGAAGAATAAAGAGCTCGACCGT
GTCCTCGGCGGCGGCATTGTGCCCGGAGGCGTTATCCTTCTGGGCGGTGACCCGGGAATTGGAAAGTCGACCATTCTTCT
GCAGACGACGGAAAATCTTGGAAGCCAGGGGCTTAAAATCCTGTATATTTCAGGTGAGGAATCCGAGCAGCAGCTCAAAA
TGCGGGCGGTCCGGATGAAGGTGAAATCCCAGAATATTTTTTTCCTGTCTGAGATTAACGTCCCCTATATCGTGGATACT
ATTTTGAATGAAAAGCCTGATCTTGTCATCATTGACTCGATCCAGACAATGTACAGTCCCACAATCACCTCGGCTCCCGG
CAGCGTCAGTCAGATAAGGGAGAATGCCAACGCATTGATGCAGATTGCCAAAAAGGATAATATTTCAATGATTCTGGTCG
GGCATGTAACCAAGGAAGGCAATATTGCCGGCCCCCGCGTTTTGGAACACATGGTTGATACGGTTCTGTATTTTGAGGGT
GAAAAGTACCATACTTACCGGATACTCAGAGGAGTTAAAAACCGTTTTGGCTCAACCAACGAGATCGGCATTTTTGAAAT
GGCACAGGATGGTCTGCATGAGGTGGCAAATCCTTCTGAAATGATGCTGTCGAGCCGTCCGAAAAACACTTGTGGCTCTG
TGGTAGTGCCTTGTATGGAGGGGACACGTCCGCTTTTAATTGAGCTTCAGGGACTTGTATCTCAGACAAGCTTTGGCAAC
CCAAGGCGCATGGCCACCGGAATGGACTATAATCGTATGGTGCTTCTTTTGGCCATTATGGAAAAACGGCTGGGATTACA
GCTTCAGAATCTTGATGCATATATCAATGTGGTTGGGGGTATGAAAATAGATGAGCCGGCCCTTGACCTGGCCGTTGTGT
CTGTGCTATACTCAAGCTTCAGGAATTTTGAAATTCCAGAGGATATGATGATTATCGGCGAGGTTGGTCTGACCGGAGAG
GTCAGAAATATACAGCACATTGAAAAACGCCTTAAAGAAGGCGCAAAGCTTGGTTTTAAGCGCTGTATCATGCCAAAGGG
AAATGCCCGGGGCCTGGAGAATACAGGGCTTGAGCTGCTGCCGGTCGATAACATATCAAAGGCTTTAAATATATTGAAGT
AG

Domains

Predicted by InterproScan.

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• AAA domain (AAA_25) (62-220)

• Subunit ChlI of Mg-chelatase (ChlI) (355-428)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	55.752	99.779	0.556
radA	Streptococcus mitis NCTC 12261	52.546	95.364	0.501
radA	Streptococcus pneumoniae Rx1	52.546	95.364	0.501
radA	Streptococcus pneumoniae D39	52.546	95.364	0.501
radA	Streptococcus pneumoniae R6	52.546	95.364	0.501
radA	Streptococcus pneumoniae TIGR4	52.546	95.364	0.501
radA	Streptococcus mitis SK321	52.546	95.364	0.501