Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   M5595_RS03740 Genome accession   NZ_CP097376
Coordinates   775552..776247 (-) Length   231 a.a.
NCBI ID   WP_038351564.1    Uniprot ID   A0AAC9QXD6
Organism   Eubacterium limosum strain B2     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 770552..781247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5595_RS03715 (M5595_03715) - 770594..772012 (-) 1419 WP_038351567.1 C69 family dipeptidase -
  M5595_RS03720 (M5595_03720) - 772230..773279 (-) 1050 WP_038351566.1 response regulator -
  M5595_RS03730 (M5595_03730) - 773646..774044 (+) 399 WP_038351565.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  M5595_RS03735 (M5595_03735) - 774100..775539 (-) 1440 WP_052237144.1 HAMP domain-containing sensor histidine kinase -
  M5595_RS03740 (M5595_03740) scnR 775552..776247 (-) 696 WP_038351564.1 response regulator transcription factor Regulator
  M5595_RS03745 (M5595_03745) - 776400..777308 (+) 909 WP_038351563.1 ABC transporter ATP-binding protein -
  M5595_RS03750 (M5595_03750) - 777308..778057 (+) 750 WP_038351562.1 ABC transporter permease -
  M5595_RS03755 (M5595_03755) - 778070..778804 (+) 735 WP_038351561.1 ABC transporter permease -
  M5595_RS03760 (M5595_03760) - 779180..780664 (-) 1485 WP_038351560.1 glycerol kinase -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 25761.04 Da        Isoelectric Point: 4.8078

>NTDB_id=689295 M5595_RS03740 WP_038351564.1 775552..776247(-) (scnR) [Eubacterium limosum strain B2]
MDYIKDKGILLVDDEPELLKLVLKILKNEGFVKVYTASSVAEGMTVFLEKAPDMAVLDVMLPDGEGFELLKFIRASSDIP
VLFLSARGNAEDRFTGFGLGADDYIIKPFLPQELVFRINAILKRAYKNEAPTFTLADATVDLDRAEIIRGEELLPLTAKE
YAILQKLYENAGKIVTIGALCDFVWEGDSYGYEKPLMAHIGRIREKIEADPSHPKSLITVKGLGYKMLVNK

Nucleotide


Download         Length: 696 bp        

>NTDB_id=689295 M5595_RS03740 WP_038351564.1 775552..776247(-) (scnR) [Eubacterium limosum strain B2]
ATGGATTACATCAAAGATAAAGGCATTCTTCTGGTTGACGATGAACCAGAGCTTTTAAAGCTGGTGCTTAAGATACTCAA
AAATGAAGGCTTTGTGAAGGTTTATACAGCGTCGAGCGTGGCCGAGGGAATGACCGTTTTCCTGGAAAAAGCTCCTGATA
TGGCCGTGCTTGATGTGATGCTGCCAGATGGTGAGGGTTTTGAGCTGCTCAAATTCATCCGTGCCTCTTCGGATATCCCG
GTGCTTTTTCTATCAGCCAGAGGCAATGCCGAGGACCGGTTCACCGGCTTTGGACTGGGAGCGGATGATTATATTATTAA
GCCCTTTCTGCCGCAGGAGCTTGTGTTTAGGATCAATGCTATTTTAAAACGTGCCTATAAAAATGAAGCGCCGACCTTTA
CTCTGGCTGATGCCACAGTAGATCTGGACCGCGCTGAGATTATCAGGGGAGAGGAGCTTCTGCCCCTTACGGCCAAAGAG
TATGCCATTCTTCAAAAGCTCTATGAAAACGCAGGGAAAATCGTAACCATCGGCGCCCTCTGCGATTTTGTATGGGAGGG
CGACAGCTATGGCTATGAAAAACCGCTCATGGCTCATATCGGGCGTATCCGGGAAAAAATCGAGGCTGACCCCAGCCATC
CAAAGTCACTTATTACAGTCAAAGGGCTGGGCTATAAAATGTTAGTAAATAAATAG

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(154-227)

Response regulator receiver domain (Response_reg)

(9-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

50

99.567

0.498