Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   M5E03_RS11295 Genome accession   NZ_CP097374
Coordinates   2208961..2209764 (-) Length   267 a.a.
NCBI ID   WP_024422935.1    Uniprot ID   A0AAX0Z9Q1
Organism   Bacillus safensis strain AHB11     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2203961..2214764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5E03_RS11275 (M5E03_11275) - 2206166..2206402 (+) 237 WP_024422931.1 DUF2627 domain-containing protein -
  M5E03_RS11280 (M5E03_11280) - 2206439..2207176 (-) 738 WP_041117937.1 glycerophosphodiester phosphodiesterase -
  M5E03_RS11285 (M5E03_11285) - 2207404..2208504 (-) 1101 WP_252049571.1 Rap family tetratricopeptide repeat protein -
  M5E03_RS11290 (M5E03_11290) - 2208492..2208689 (-) 198 WP_024422934.1 hypothetical protein -
  M5E03_RS11295 (M5E03_11295) spo0A 2208961..2209764 (-) 804 WP_024422935.1 sporulation transcription factor Spo0A Regulator
  M5E03_RS11300 (M5E03_11300) spoIVB 2210049..2211326 (-) 1278 WP_025092993.1 SpoIVB peptidase -
  M5E03_RS11305 (M5E03_11305) recN 2211526..2213259 (-) 1734 WP_252049572.1 DNA repair protein RecN Machinery gene
  M5E03_RS11310 (M5E03_11310) ahrC 2213293..2213742 (-) 450 WP_024422938.1 transcriptional regulator AhrC/ArgR -
  M5E03_RS11315 (M5E03_11315) - 2213906..2214760 (-) 855 WP_252049573.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29932.46 Da        Isoelectric Point: 6.3918

>NTDB_id=689263 M5E03_RS11295 WP_024422935.1 2208961..2209764(-) (spo0A) [Bacillus safensis strain AHB11]
MEKIKVCVADDNRELVGLLTEYIEGQEDMEVLGVAYNGQECLTLFKDKEPDVLLLDIIMPHLDGLAVLERLRENNEMTKQ
PSVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNGTQVTHRSSSIQNSVLRNKPEPKRKNLDASITTI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMSKAKPTNSEFIAMVADRLRLEHRAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=689263 M5E03_RS11295 WP_024422935.1 2208961..2209764(-) (spo0A) [Bacillus safensis strain AHB11]
GTGGAGAAAATTAAAGTGTGTGTAGCTGATGACAATCGAGAGCTTGTTGGCCTTTTGACAGAGTATATTGAGGGACAGGA
AGATATGGAAGTACTTGGCGTGGCGTATAATGGTCAGGAATGCCTGACATTATTTAAAGATAAAGAGCCCGACGTTCTCC
TCTTAGACATTATTATGCCTCATTTAGACGGTCTTGCTGTACTAGAACGCCTCCGTGAAAACAATGAAATGACAAAACAG
CCAAGTGTGATTATGCTAACGGCATTTGGACAAGAAGATGTCACGAAAAAAGCAGTTGATTTGGGCGCATCCTATTTCAT
TTTAAAGCCATTTGATATGGAAAACCTAGTAGGTCATATTCGTCAAGTCAGTGGAAACGGCACACAAGTTACCCATCGCT
CTTCATCAATCCAAAACAGTGTTCTTCGTAACAAACCTGAACCGAAACGTAAAAACTTAGATGCGAGCATTACGACCATT
ATTCATGAGATTGGCGTGCCCGCTCATATTAAAGGCTATTTATACTTAAGAGAAGCCATTTCTATGGTGTACAATGACAT
TGAGCTTCTCGGAAGCATCACTAAAGTGTTGTACCCAGACATTGCAAAGAAATTTAACACGACTGCCAGCAGGGTAGAAC
GAGCGATTCGTCATGCCATTGAAGTCGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCACTCTTTGGTTATACTGTC
AGCATGTCAAAAGCGAAACCAACCAATTCAGAATTTATTGCCATGGTAGCTGATCGTCTGCGTTTAGAGCATAGAGCAAG
CTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-120)

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

88.06

100

0.884