Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   M5E03_RS08605 Genome accession   NZ_CP097374
Coordinates   1686853..1688103 (+) Length   416 a.a.
NCBI ID   WP_041117442.1    Uniprot ID   -
Organism   Bacillus safensis strain AHB11     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1681853..1693103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5E03_RS08580 (M5E03_08580) ymfI 1683276..1684004 (+) 729 WP_135031741.1 elongation factor P 5-aminopentanone reductase -
  M5E03_RS08585 (M5E03_08585) - 1684078..1684335 (+) 258 WP_024424114.1 DUF3243 domain-containing protein -
  M5E03_RS08590 (M5E03_08590) - 1684467..1685258 (+) 792 WP_003211480.1 DUF3388 domain-containing protein -
  M5E03_RS08595 (M5E03_08595) - 1685282..1686181 (+) 900 WP_120206993.1 helix-turn-helix domain-containing protein -
  M5E03_RS08600 (M5E03_08600) pgsA 1686255..1686836 (+) 582 WP_008358030.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  M5E03_RS08605 (M5E03_08605) cinA 1686853..1688103 (+) 1251 WP_041117442.1 competence/damage-inducible protein A Machinery gene
  M5E03_RS08610 (M5E03_08610) recA 1688281..1689324 (+) 1044 WP_034281901.1 recombinase RecA Machinery gene
  M5E03_RS08615 (M5E03_08615) rny 1689633..1691195 (+) 1563 WP_003211958.1 ribonuclease Y -
  M5E03_RS08620 (M5E03_08620) - 1691286..1692080 (+) 795 WP_024424109.1 TIGR00282 family metallophosphoesterase -
  M5E03_RS08625 (M5E03_08625) spoVS 1692283..1692543 (+) 261 WP_003211281.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45537.61 Da        Isoelectric Point: 4.7414

>NTDB_id=689259 M5E03_RS08605 WP_041117442.1 1686853..1688103(+) (cinA) [Bacillus safensis strain AHB11]
MKSERKAEIIAVGSELLLGQITNTNAQFISKQLAEIGVNVYYHTAVGDNPERLKQAIQVAQERSNFIIFSGGLGPTKDDL
TKETIASSLGKELVLNEEAFESIQDYFLKTGRVMSPNNRKQALVLEGSDVLVNRFGMAPGMFVQEDDTFYMLLPGPPSEL
HPMFENEAKPLISEKLGLKEKIVSVVLRFFGIGESQLETDLEDLIDAQTNPTIAPLASDGEVTLRLTAKHEDEKETERLL
KETEAQILARVGEYFYGYGDTSLVREASKALHEHGKTVAAAESLTGGMFSEWLTDLEGASSILNGSVVCYTNQVKQQVLG
CREETLSSHGAVSKECALELAEGVRKLTGSDIGISFTGVAGPDTQEGQPVGKVFIGLSTKDQTDVFEWMFTGSRSGIRKR
AVKYGLHHLLNLLKES

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=689259 M5E03_RS08605 WP_041117442.1 1686853..1688103(+) (cinA) [Bacillus safensis strain AHB11]
TTGAAGTCAGAGAGAAAAGCAGAAATTATTGCAGTCGGTTCCGAACTATTGCTTGGGCAAATTACGAATACGAATGCACA
ATTCATCAGCAAACAACTAGCCGAAATTGGTGTGAATGTTTATTACCATACAGCAGTTGGTGACAATCCAGAGCGTTTAA
AACAGGCCATTCAGGTGGCGCAGGAAAGATCTAATTTTATTATCTTCTCAGGTGGTCTTGGACCAACCAAAGATGACTTA
ACAAAAGAAACCATTGCGAGCTCGCTTGGGAAAGAGCTTGTACTAAATGAAGAAGCATTTGAATCGATTCAAGACTACTT
TCTAAAGACCGGACGCGTTATGTCACCGAACAACCGTAAGCAGGCACTCGTTCTAGAAGGGTCTGATGTGCTCGTGAACC
GTTTCGGGATGGCCCCGGGTATGTTTGTTCAAGAAGACGATACGTTTTATATGCTTCTTCCTGGACCGCCAAGTGAATTG
CACCCGATGTTTGAAAACGAGGCAAAGCCGCTGATTTCTGAGAAACTTGGCTTAAAGGAAAAGATCGTGTCTGTTGTTCT
GCGCTTCTTCGGAATCGGTGAATCGCAGCTTGAAACAGACCTAGAAGATTTAATTGACGCTCAAACGAATCCGACAATTG
CACCACTCGCATCTGACGGTGAAGTGACGCTAAGGCTGACTGCTAAGCATGAGGATGAAAAAGAAACAGAGCGTCTGTTA
AAAGAAACAGAAGCGCAAATTTTGGCGCGGGTAGGTGAGTACTTCTACGGATATGGGGATACATCACTTGTCCGCGAAGC
ATCCAAAGCCTTGCACGAGCACGGAAAAACAGTAGCAGCAGCAGAAAGCCTGACTGGCGGAATGTTCTCCGAATGGCTGA
CAGATCTCGAAGGAGCATCATCCATTTTGAACGGAAGTGTGGTTTGTTATACAAACCAAGTCAAGCAGCAGGTACTTGGC
TGCCGGGAGGAAACATTGTCTTCTCATGGTGCTGTCAGCAAAGAGTGTGCTTTAGAGCTTGCTGAAGGAGTTAGAAAGCT
GACCGGAAGTGATATTGGCATTAGCTTTACGGGTGTAGCAGGACCTGATACCCAAGAGGGTCAGCCTGTTGGAAAAGTGT
TCATTGGACTATCTACGAAAGACCAGACGGACGTGTTTGAATGGATGTTTACAGGCAGCCGGTCGGGCATTCGAAAGCGT
GCTGTGAAATATGGTCTGCATCACTTACTCAACTTATTAAAAGAGAGTTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(186-257)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Competence-damaged protein (CinA)

(262-412)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

75.181

99.76

0.75
  cinA Streptococcus pneumoniae TIGR4

47.981

100

0.486
  cinA Streptococcus mitis SK321

47.981

100

0.486
  cinA Streptococcus mitis NCTC 12261

47.743

100

0.483
  cinA Streptococcus pneumoniae Rx1

47.743

100

0.483
  cinA Streptococcus pneumoniae R6

47.743

100

0.483
  cinA Streptococcus mutans UA159

48.077

100

0.481
  cinA Streptococcus pneumoniae D39

47.506

100

0.481
  cinA Streptococcus suis isolate S10

43.386

90.865

0.394