Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   M5E03_RS07255 Genome accession   NZ_CP097374
Coordinates   1413739..1414017 (+) Length   92 a.a.
NCBI ID   WP_017359400.1    Uniprot ID   A0A9X0FXL5
Organism   Bacillus safensis strain AHB11     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1408739..1419017
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5E03_RS07230 (M5E03_07230) - 1408835..1409110 (-) 276 WP_070325775.1 hypothetical protein -
  M5E03_RS07235 (M5E03_07235) - 1409254..1410873 (+) 1620 WP_024426884.1 ABC-F family ATP-binding cassette domain-containing protein -
  M5E03_RS07240 (M5E03_07240) - 1410909..1412141 (-) 1233 WP_211042825.1 aminopeptidase -
  M5E03_RS07245 (M5E03_07245) - 1412249..1412380 (-) 132 WP_003210922.1 protein YkpC -
  M5E03_RS07250 (M5E03_07250) mreBH 1412455..1413462 (-) 1008 WP_024424745.1 rod-share determining protein MreBH -
  M5E03_RS07255 (M5E03_07255) abrB 1413739..1414017 (+) 279 WP_017359400.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  M5E03_RS07260 (M5E03_07260) - 1414162..1415472 (+) 1311 WP_252050401.1 ATP-binding protein -
  M5E03_RS07265 (M5E03_07265) - 1415477..1416313 (+) 837 WP_034623312.1 gamma-glutamylcyclotransferase -
  M5E03_RS07270 (M5E03_07270) - 1416351..1417019 (+) 669 WP_008345123.1 potassium channel family protein -
  M5E03_RS07275 (M5E03_07275) ade 1417282..1419009 (+) 1728 WP_252050402.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10305.97 Da        Isoelectric Point: 4.5332

>NTDB_id=689256 M5E03_RS07255 WP_017359400.1 1413739..1414017(+) (abrB) [Bacillus safensis strain AHB11]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSMEFFIDGDKIVLKKYQPEGVCLMTGEITSENHEYGNGQITLSAEGAE
LLLKELQEALQQ

Nucleotide


Download         Length: 279 bp        

>NTDB_id=689256 M5E03_RS07255 WP_017359400.1 1413739..1414017(+) (abrB) [Bacillus safensis strain AHB11]
TTGAAATCTATCGGAGTCGTAAGAAAAGTAGACGAACTAGGGCGTATTGTCATGCCAATCGAATTGAGAAGAGCACTTGA
TATCGCTATTAAAGACAGTATGGAATTTTTTATAGATGGAGATAAAATCGTCTTGAAAAAATATCAGCCAGAGGGTGTTT
GTCTCATGACTGGTGAGATTACATCAGAGAACCATGAATACGGAAATGGTCAAATTACATTAAGCGCTGAAGGCGCAGAA
CTGCTGTTAAAAGAGCTGCAAGAAGCTCTTCAGCAGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.348

100

0.543