Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   M5E03_RS07020 Genome accession   NZ_CP097374
Coordinates   1373620..1374081 (-) Length   153 a.a.
NCBI ID   WP_008356877.1    Uniprot ID   -
Organism   Bacillus safensis strain AHB11     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1368620..1379081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5E03_RS06995 (M5E03_06995) - 1369225..1370109 (+) 885 WP_252050392.1 cation diffusion facilitator family transporter -
  M5E03_RS07000 (M5E03_07000) - 1370174..1370326 (-) 153 WP_162842519.1 hypothetical protein -
  M5E03_RS07005 (M5E03_07005) - 1370628..1371167 (+) 540 WP_024424707.1 RDD family protein -
  M5E03_RS07010 (M5E03_07010) - 1371292..1372602 (+) 1311 WP_034281575.1 MFS transporter -
  M5E03_RS07015 (M5E03_07015) - 1372676..1373584 (+) 909 WP_024424709.1 chemotaxis protein -
  M5E03_RS07020 (M5E03_07020) kre 1373620..1374081 (-) 462 WP_008356877.1 YkyB family protein Regulator
  M5E03_RS07025 (M5E03_07025) - 1374595..1374771 (+) 177 WP_252050393.1 hypothetical protein -
  M5E03_RS07030 (M5E03_07030) - 1374898..1375815 (-) 918 WP_252050394.1 AraC family transcriptional regulator -
  M5E03_RS07035 (M5E03_07035) - 1375929..1376825 (+) 897 WP_252050395.1 DMT family transporter -
  M5E03_RS07040 (M5E03_07040) - 1376978..1377193 (-) 216 WP_024424712.1 hypothetical protein -
  M5E03_RS07045 (M5E03_07045) - 1377453..1378730 (-) 1278 WP_034281582.1 MFS transporter -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17711.30 Da        Isoelectric Point: 10.2452

>NTDB_id=689254 M5E03_RS07020 WP_008356877.1 1373620..1374081(-) (kre) [Bacillus safensis strain AHB11]
MDDYAHTKDIEPTAENIAKAIYTVNRHAKTAPNPKFLYLLKKRALQKLLQEGKGRKVGLHFSNNPKYSQQQSDVLIEIGD
YYFHLPPTKEDFEFLPHLGNLNQSYRNPKANMSLNRAKQILQTYVGLKEKPAATKQKSHYTKPVFKRLGESYF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=689254 M5E03_RS07020 WP_008356877.1 1373620..1374081(-) (kre) [Bacillus safensis strain AHB11]
ATGGACGATTATGCTCATACTAAAGACATAGAACCTACAGCAGAAAACATCGCAAAAGCCATTTATACTGTTAACCGCCA
TGCTAAAACCGCACCAAACCCCAAGTTTCTTTATCTTTTGAAAAAACGCGCGCTGCAAAAACTATTGCAAGAAGGTAAAG
GAAGAAAAGTGGGCCTACATTTCTCTAACAATCCCAAGTATAGTCAACAACAGTCCGACGTGCTGATTGAAATTGGAGAT
TATTATTTTCACCTGCCACCAACGAAAGAAGACTTCGAATTTTTGCCACACTTAGGAAATTTAAATCAATCATATCGCAA
TCCGAAAGCGAATATGTCATTAAACCGAGCAAAGCAAATACTTCAAACGTATGTCGGTTTAAAAGAAAAACCTGCCGCCA
CAAAACAAAAATCACATTACACAAAGCCCGTCTTCAAACGACTCGGGGAAAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

75.974

100

0.765