Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   M5E03_RS05480 Genome accession   NZ_CP097374
Coordinates   1075405..1075983 (+) Length   192 a.a.
NCBI ID   WP_034282183.1    Uniprot ID   -
Organism   Bacillus safensis strain AHB11     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1070405..1080983
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5E03_RS05460 (M5E03_05460) - 1070899..1072206 (-) 1308 Protein_1017 globin-coupled sensor protein -
  M5E03_RS05465 (M5E03_05465) - 1072288..1073820 (-) 1533 WP_098676788.1 FAD-dependent oxidoreductase -
  M5E03_RS05470 (M5E03_05470) - 1073962..1074822 (+) 861 WP_034282185.1 SDR family oxidoreductase -
  M5E03_RS05475 (M5E03_05475) - 1074879..1075115 (-) 237 WP_008348804.1 IDEAL domain-containing protein -
  M5E03_RS05480 (M5E03_05480) comK 1075405..1075983 (+) 579 WP_034282183.1 competence protein ComK Regulator
  M5E03_RS05485 (M5E03_05485) - 1076282..1076764 (+) 483 WP_252050316.1 hypothetical protein -
  M5E03_RS05490 (M5E03_05490) - 1076796..1078235 (-) 1440 WP_252050317.1 PLP-dependent aminotransferase family protein -
  M5E03_RS05495 (M5E03_05495) - 1078381..1079550 (+) 1170 WP_252050318.1 MFS transporter -
  M5E03_RS05500 (M5E03_05500) - 1079616..1079891 (+) 276 WP_065214458.1 barstar family protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22322.36 Da        Isoelectric Point: 8.7962

>NTDB_id=689242 M5E03_RS05480 WP_034282183.1 1075405..1075983(+) (comK) [Bacillus safensis strain AHB11]
MSGISETPLDSYVINQTTMAVLPVEEGKRVYSKVIERETSFYVELKPLQIIERSCRFFGSSYAGRKAGTYEVTGISHKPP
IVIDSSNHLYFFPTYSSNRPQCGWISHKYIHTFQESSLGDTVVTFTNEQTVKLDVSYKSFESQVHRTAYLRTKFQDRLDG
GLPKKQEFMLYPKEQQLNLVYDFILRELRNKY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=689242 M5E03_RS05480 WP_034282183.1 1075405..1075983(+) (comK) [Bacillus safensis strain AHB11]
GTGTCAGGAATTAGTGAAACACCTTTAGATTCATACGTCATTAATCAAACAACAATGGCGGTCCTTCCAGTTGAAGAAGG
AAAAAGAGTATATTCAAAAGTTATAGAAAGAGAGACAAGCTTTTACGTTGAATTAAAGCCCCTGCAAATTATTGAACGCA
GCTGCAGATTCTTCGGCTCAAGCTATGCAGGCAGAAAGGCGGGAACATACGAAGTAACAGGAATTTCTCACAAACCCCCA
ATTGTGATTGACTCATCCAATCATCTGTATTTTTTCCCAACCTATTCATCCAACCGTCCTCAGTGCGGCTGGATCTCCCA
CAAATACATTCATACCTTCCAAGAATCATCCCTCGGAGACACGGTGGTCACCTTTACAAACGAGCAAACCGTCAAACTTG
ATGTCTCATATAAATCATTTGAGAGTCAGGTGCACCGGACAGCATATCTCCGAACGAAATTTCAAGATCGTCTCGATGGA
GGTCTTCCAAAGAAACAAGAATTTATGCTGTATCCAAAAGAACAGCAGCTCAATCTCGTATACGATTTTATATTAAGGGA
GCTTCGAAACAAATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

61.458

100

0.615