Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   M5E02_RS11705 Genome accession   NZ_CP097373
Coordinates   2288165..2288935 (-) Length   256 a.a.
NCBI ID   WP_095409043.1    Uniprot ID   -
Organism   Bacillus safensis strain AHB2     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2283165..2293935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5E02_RS11685 (M5E02_11685) - 2283258..2284079 (-) 822 WP_008342399.1 pyruvate, water dikinase regulatory protein -
  M5E02_RS11690 (M5E02_11690) - 2284105..2284743 (-) 639 WP_024423017.1 helix-turn-helix transcriptional regulator -
  M5E02_RS11695 (M5E02_11695) glyS 2284911..2286956 (-) 2046 WP_252056312.1 glycine--tRNA ligase subunit beta -
  M5E02_RS11700 (M5E02_11700) glyQ 2286949..2287836 (-) 888 WP_012010611.1 glycine--tRNA ligase subunit alpha -
  M5E02_RS11705 (M5E02_11705) recO 2288165..2288935 (-) 771 WP_095409043.1 DNA repair protein RecO Machinery gene
  M5E02_RS11710 (M5E02_11710) - 2288971..2289114 (-) 144 WP_003217288.1 YqzL family protein -
  M5E02_RS11715 (M5E02_11715) era 2289263..2290168 (-) 906 WP_252056313.1 GTPase Era -
  M5E02_RS11720 (M5E02_11720) - 2290161..2290559 (-) 399 WP_008356263.1 cytidine deaminase -
  M5E02_RS11725 (M5E02_11725) - 2290673..2291059 (-) 387 WP_048238914.1 diacylglycerol kinase family protein -
  M5E02_RS11730 (M5E02_11730) ybeY 2291037..2291516 (-) 480 WP_061408615.1 rRNA maturation RNase YbeY -
  M5E02_RS11735 (M5E02_11735) - 2291517..2293604 (-) 2088 WP_252058309.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29288.93 Da        Isoelectric Point: 8.1204

>NTDB_id=689208 M5E02_RS11705 WP_095409043.1 2288165..2288935(-) (recO) [Bacillus safensis strain AHB2]
MLIKSEGIVLRTTDYGETNKIVTLLTREHGKIGVMARGAKKSNSRLSAISQPFLYGTFLIQSSTGLGTLQQGEMIESMRT
IREDLFLTAYAAYMTELLDKGTEEKKPNPYLFELLLQSLRHLNEGTDADIILFIVEVKMLSVMGMKPELDQCVHCGQKEG
QFHFSIRDNGFICQNCFSKDPYKLPLSPAAARLLRLFHYFDLSRLGQVDVKPQTKQEIRQVLDHYYDEYSGLYLKSKKFM
NQMESMKKLMGDENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=689208 M5E02_RS11705 WP_095409043.1 2288165..2288935(-) (recO) [Bacillus safensis strain AHB2]
ATGCTCATTAAAAGTGAAGGAATCGTCCTTAGAACAACAGATTATGGCGAAACAAACAAAATTGTCACGCTGCTCACTAG
AGAACATGGAAAAATTGGTGTGATGGCAAGAGGCGCTAAAAAATCAAACAGCCGCCTGTCAGCTATAAGCCAGCCGTTTT
TATACGGCACATTTCTCATCCAATCATCAACAGGACTTGGAACTCTCCAGCAAGGCGAAATGATTGAAAGTATGCGGACC
ATTCGGGAAGACTTATTTCTGACCGCATATGCCGCATATATGACGGAATTACTTGATAAAGGGACAGAAGAAAAAAAGCC
AAACCCTTATTTGTTTGAGCTTCTGCTTCAATCTCTGCGTCATCTCAATGAAGGCACAGATGCTGATATTATTTTATTTA
TCGTAGAGGTCAAAATGTTATCAGTGATGGGGATGAAGCCTGAACTGGATCAATGTGTCCACTGTGGTCAAAAAGAAGGG
CAGTTCCATTTCTCGATAAGAGATAACGGATTCATTTGCCAAAATTGTTTTTCGAAAGATCCATATAAACTGCCCTTATC
CCCCGCAGCTGCAAGGCTGCTCCGTTTGTTTCATTATTTTGATTTATCAAGGCTTGGGCAGGTTGATGTGAAGCCGCAGA
CGAAACAAGAAATTCGTCAAGTGCTTGATCACTACTATGATGAATATTCCGGCCTCTATTTAAAATCAAAAAAATTCATG
AATCAGATGGAATCCATGAAAAAGCTAATGGGTGACGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

75.391

100

0.754