Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   M5E02_RS07760 Genome accession   NZ_CP097373
Coordinates   1525670..1526572 (+) Length   300 a.a.
NCBI ID   WP_252058037.1    Uniprot ID   -
Organism   Bacillus safensis strain AHB2     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1520670..1531572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5E02_RS07735 (M5E02_07735) - 1520780..1521306 (+) 527 Protein_1477 ribonuclease HII -
  M5E02_RS07740 (M5E02_07740) - 1521333..1523072 (+) 1740 WP_252058036.1 glycosyltransferase -
  M5E02_RS07745 (M5E02_07745) - 1523069..1523344 (+) 276 WP_047202155.1 FlhB-like flagellar biosynthesis protein -
  M5E02_RS07750 (M5E02_07750) sucC 1523521..1524681 (+) 1161 WP_024426972.1 ADP-forming succinate--CoA ligase subunit beta -
  M5E02_RS07755 (M5E02_07755) sucD 1524704..1525606 (+) 903 WP_007499624.1 succinate--CoA ligase subunit alpha -
  M5E02_RS07760 (M5E02_07760) dprA 1525670..1526572 (+) 903 WP_252058037.1 DNA-processing protein DprA Machinery gene
  M5E02_RS07765 (M5E02_07765) topA 1526766..1528841 (+) 2076 WP_252058038.1 type I DNA topoisomerase -
  M5E02_RS07770 (M5E02_07770) trmFO 1528912..1530216 (+) 1305 WP_024424183.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  M5E02_RS07775 (M5E02_07775) xerC 1530279..1531196 (+) 918 WP_041108978.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34199.54 Da        Isoelectric Point: 8.5917

>NTDB_id=689197 M5E02_RS07760 WP_252058037.1 1525670..1526572(+) (dprA) [Bacillus safensis strain AHB2]
MYNVSERMIFHRLKGLISPSLLTKWWKVDPELYINEETHHFKQDRALQTIDFTRLKQAEENEFPIFQHIVQAYLKQNIHM
IPITSPLYPSTLKNIYDPPPVLFLKGNVSYLNEEKSLGVVGTRVPSSYGEACVKKIVDELVKEDWMIVSGLAKGIDGLAH
KECIRKKGKTIGIIAGGFQHLYPKEHEQMAQYMGEHHLLLSEHPPYVKPEKWHFPMRNRLISALTKGTIVIQCKEKSGSL
ITAYQALEQGKEVFAVAGSIFDPNSTGPARLIQQGAKLVHSTKDIFEEFSLRSVQYTEPS

Nucleotide


Download         Length: 903 bp        

>NTDB_id=689197 M5E02_RS07760 WP_252058037.1 1525670..1526572(+) (dprA) [Bacillus safensis strain AHB2]
ATGTACAACGTGTCCGAAAGAATGATTTTTCACCGCTTAAAAGGCCTCATCTCACCCTCATTATTAACAAAATGGTGGAA
AGTCGATCCTGAGCTATATATAAATGAAGAAACACATCATTTTAAACAGGATCGAGCATTACAAACGATCGACTTTACCC
GCTTAAAACAAGCTGAAGAAAATGAATTCCCCATTTTTCAACACATCGTTCAAGCCTATTTAAAGCAAAACATTCACATG
ATTCCCATCACATCACCCTTATATCCCAGCACACTAAAAAATATTTATGATCCTCCCCCTGTGTTATTCCTAAAAGGAAA
CGTATCATATTTAAATGAAGAAAAAAGTTTAGGTGTAGTCGGAACAAGAGTTCCATCATCTTATGGAGAAGCATGTGTGA
AGAAAATTGTTGATGAGCTTGTAAAGGAAGATTGGATGATTGTCAGTGGTTTAGCTAAAGGAATCGATGGACTTGCACAT
AAAGAGTGCATCAGGAAAAAAGGAAAAACGATCGGCATTATAGCAGGCGGCTTTCAGCATTTATACCCAAAAGAGCATGA
GCAAATGGCTCAATACATGGGCGAGCATCATTTGCTTTTGTCAGAGCATCCTCCTTATGTCAAACCAGAAAAGTGGCATT
TTCCAATGAGAAATCGTTTAATTAGTGCATTGACGAAAGGAACCATCGTGATACAGTGCAAAGAAAAGAGCGGATCTCTT
ATTACAGCCTATCAAGCACTTGAGCAAGGAAAAGAGGTATTTGCGGTTGCGGGATCCATCTTTGATCCTAATTCCACAGG
TCCGGCAAGACTCATTCAGCAGGGAGCAAAGCTTGTTCATTCCACAAAGGATATTTTTGAGGAATTCTCCTTGCGCAGTG
TTCAATATACTGAACCCTCATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

55.556

96

0.533
  dprA Legionella pneumophila strain ERS1305867

37.705

100

0.383