Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   M5E02_RS06890 Genome accession   NZ_CP097373
Coordinates   1355146..1355424 (+) Length   92 a.a.
NCBI ID   WP_012009813.1    Uniprot ID   A8FCR0
Organism   Bacillus safensis strain AHB2     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1350146..1360424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5E02_RS06865 (M5E02_06865) - 1350239..1350514 (-) 276 WP_048238832.1 hypothetical protein -
  M5E02_RS06870 (M5E02_06870) - 1350658..1352277 (+) 1620 WP_048238833.1 ATP-binding cassette domain-containing protein -
  M5E02_RS06875 (M5E02_06875) - 1352316..1353548 (-) 1233 WP_048238834.1 aminopeptidase -
  M5E02_RS06880 (M5E02_06880) - 1353656..1353787 (-) 132 WP_003210922.1 protein YkpC -
  M5E02_RS06885 (M5E02_06885) mreBH 1353862..1354869 (-) 1008 WP_024424745.1 rod-share determining protein MreBH -
  M5E02_RS06890 (M5E02_06890) abrB 1355146..1355424 (+) 279 WP_012009813.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  M5E02_RS06895 (M5E02_06895) - 1355569..1356879 (+) 1311 WP_286037394.1 ATP-binding protein -
  M5E02_RS06900 (M5E02_06900) - 1356884..1357720 (+) 837 WP_252057976.1 gamma-glutamylcyclotransferase family protein -
  M5E02_RS06905 (M5E02_06905) - 1357758..1358426 (+) 669 WP_008345123.1 TrkA family potassium uptake protein -
  M5E02_RS06910 (M5E02_06910) ade 1358689..1360419 (+) 1731 WP_252057977.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10291.94 Da        Isoelectric Point: 4.5216

>NTDB_id=689196 M5E02_RS06890 WP_012009813.1 1355146..1355424(+) (abrB) [Bacillus safensis strain AHB2]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSMEFFIDGDKIVLKKYQPEGVCLMTGEITSENHDYGNGQITLSAEGAE
LLLKELQEALQQ

Nucleotide


Download         Length: 279 bp        

>NTDB_id=689196 M5E02_RS06890 WP_012009813.1 1355146..1355424(+) (abrB) [Bacillus safensis strain AHB2]
TTGAAATCTATCGGAGTCGTAAGAAAAGTAGACGAACTAGGGCGTATTGTGATGCCAATCGAATTGAGAAGAGCACTTGA
TATCGCTATTAAAGACAGTATGGAATTTTTTATAGATGGAGATAAAATCGTCTTGAAAAAATATCAGCCAGAGGGTGTTT
GTCTCATGACTGGTGAGATTACATCAGAGAACCATGATTACGGAAATGGTCAAATTACATTAAGCGCTGAAGGCGCAGAA
CTACTGTTAAAAGAGCTGCAAGAAGCTCTTCAGCAGTAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)

AbrB C-terminal domain (AbrB_C)

(53-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A8FCR0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.348

100

0.543