Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   M5E02_RS06655 Genome accession   NZ_CP097373
Coordinates   1314849..1315310 (-) Length   153 a.a.
NCBI ID   WP_008356877.1    Uniprot ID   -
Organism   Bacillus safensis strain AHB2     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1309849..1320310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5E02_RS06630 (M5E02_06630) - 1310451..1311335 (+) 885 WP_252057954.1 cation diffusion facilitator family transporter -
  M5E02_RS06635 (M5E02_06635) - 1311400..1311552 (-) 153 WP_162842519.1 hypothetical protein -
  M5E02_RS06640 (M5E02_06640) - 1311854..1312393 (+) 540 WP_252057955.1 RDD family protein -
  M5E02_RS06645 (M5E02_06645) - 1312519..1313829 (+) 1311 WP_252057956.1 MFS transporter -
  M5E02_RS06650 (M5E02_06650) - 1313903..1314811 (+) 909 WP_142944660.1 chemotaxis protein -
  M5E02_RS06655 (M5E02_06655) kre 1314849..1315310 (-) 462 WP_008356877.1 YkyB family protein Regulator
  M5E02_RS06660 (M5E02_06660) - 1315787..1315960 (+) 174 WP_252057957.1 hypothetical protein -
  M5E02_RS06665 (M5E02_06665) - 1316356..1317273 (-) 918 WP_252057958.1 AraC family transcriptional regulator -
  M5E02_RS06670 (M5E02_06670) - 1317387..1318298 (+) 912 WP_252057959.1 EamA family transporter -
  M5E02_RS06675 (M5E02_06675) - 1318408..1318623 (-) 216 WP_047203675.1 hypothetical protein -
  M5E02_RS06680 (M5E02_06680) - 1318870..1320147 (-) 1278 WP_048238778.1 MFS transporter -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17711.30 Da        Isoelectric Point: 10.2452

>NTDB_id=689194 M5E02_RS06655 WP_008356877.1 1314849..1315310(-) (kre) [Bacillus safensis strain AHB2]
MDDYAHTKDIEPTAENIAKAIYTVNRHAKTAPNPKFLYLLKKRALQKLLQEGKGRKVGLHFSNNPKYSQQQSDVLIEIGD
YYFHLPPTKEDFEFLPHLGNLNQSYRNPKANMSLNRAKQILQTYVGLKEKPAATKQKSHYTKPVFKRLGESYF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=689194 M5E02_RS06655 WP_008356877.1 1314849..1315310(-) (kre) [Bacillus safensis strain AHB2]
ATGGACGATTATGCTCATACTAAAGACATAGAACCTACAGCAGAAAACATCGCAAAAGCCATTTATACTGTTAACCGCCA
TGCTAAAACCGCACCAAACCCCAAGTTTCTTTATCTTTTGAAAAAACGAGCGCTGCAAAAACTATTGCAAGAAGGTAAAG
GAAGAAAAGTGGGCCTACATTTCTCTAACAATCCCAAGTATAGTCAACAACAGTCCGACGTGCTGATTGAAATTGGAGAT
TATTATTTTCACCTGCCACCAACTAAAGAAGACTTCGAATTTTTGCCACACTTAGGAAATTTAAATCAATCATATCGCAA
TCCGAAAGCGAATATGTCATTAAACCGAGCAAAGCAAATACTTCAAACGTATGTCGGTTTAAAAGAAAAACCTGCCGCCA
CAAAACAAAAATCACATTACACAAAGCCCGTCTTCAAACGACTCGGGGAAAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

75.974

100

0.765