Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   M5E02_RS05100 Genome accession   NZ_CP097373
Coordinates   1016195..1016773 (+) Length   192 a.a.
NCBI ID   WP_252057797.1    Uniprot ID   -
Organism   Bacillus safensis strain AHB2     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1011195..1021773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5E02_RS05080 (M5E02_05080) - 1011691..1012986 (-) 1296 WP_252057794.1 globin-coupled sensor protein -
  M5E02_RS05085 (M5E02_05085) - 1013078..1014610 (-) 1533 WP_252057795.1 FAD-dependent oxidoreductase -
  M5E02_RS05090 (M5E02_05090) - 1014752..1015612 (+) 861 WP_252057796.1 SDR family oxidoreductase -
  M5E02_RS05095 (M5E02_05095) - 1015669..1015905 (-) 237 WP_008348804.1 IDEAL domain-containing protein -
  M5E02_RS05100 (M5E02_05100) comK 1016195..1016773 (+) 579 WP_252057797.1 competence protein ComK Regulator
  M5E02_RS05105 (M5E02_05105) - 1017090..1017572 (+) 483 WP_252057798.1 hypothetical protein -
  M5E02_RS05110 (M5E02_05110) - 1017604..1017888 (-) 285 WP_252057799.1 hypothetical protein -
  M5E02_RS05115 (M5E02_05115) - 1017991..1018269 (+) 279 WP_252058270.1 barstar family protein -
  M5E02_RS05120 (M5E02_05120) - 1018409..1019365 (+) 957 WP_252057800.1 LCP family protein -
  M5E02_RS05125 (M5E02_05125) - 1019438..1019800 (-) 363 WP_024425491.1 hypothetical protein -
  M5E02_RS05130 (M5E02_05130) - 1019957..1020574 (+) 618 WP_095408145.1 TVP38/TMEM64 family protein -
  M5E02_RS05135 (M5E02_05135) lepB 1020574..1021086 (+) 513 WP_252057801.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22308.29 Da        Isoelectric Point: 8.7996

>NTDB_id=689183 M5E02_RS05100 WP_252057797.1 1016195..1016773(+) (comK) [Bacillus safensis strain AHB2]
MSGISETPLDSYVINQTTMAVLPVEEGKRVYSKVIERETSFYVELKPLQIIERSCRFFGSSYAGRKAGTYEVTGISHKPP
IVIDSSNHLYFFPTYSSNRPQCGWISHKYIHTFQESSLGDTVVTFTNEQTVKLDVSYKSFESQGHRTAYLRTKFQDRLDG
GLPKKQEFMLYPKEQQLNLVYDFILRELRNRY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=689183 M5E02_RS05100 WP_252057797.1 1016195..1016773(+) (comK) [Bacillus safensis strain AHB2]
GTGTCAGGAATTAGTGAAACACCTTTAGATTCATACGTCATTAATCAAACAACAATGGCGGTCCTTCCAGTTGAAGAAGG
AAAAAGAGTATATTCAAAAGTCATAGAAAGAGAGACAAGCTTTTACGTTGAATTAAAACCCCTGCAAATTATTGAACGCA
GCTGCAGATTCTTCGGCTCAAGCTATGCAGGCAGAAAGGCGGGAACATACGAAGTAACAGGAATATCCCATAAGCCTCCA
ATTGTGATTGACTCATCCAATCATCTGTATTTCTTCCCAACTTATTCATCCAACCGTCCTCAGTGCGGCTGGATCTCCCA
CAAATACATTCATACCTTCCAAGAATCATCCCTCGGAGACACGGTGGTCACCTTTACAAATGAGCAAACCGTCAAACTTG
ATGTCTCATATAAATCATTTGAGAGTCAGGGGCACCGAACAGCATATCTCCGAACGAAATTTCAAGATCGTCTGGATGGA
GGTCTTCCTAAGAAACAAGAATTTATGTTGTATCCAAAGGAACAGCAGCTCAATCTCGTATACGATTTTATATTAAGGGA
GCTACGTAATAGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

61.458

100

0.615