Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   OSV60_RS10280 Genome accession   NZ_CP113077
Coordinates   2157640..2158275 (-) Length   211 a.a.
NCBI ID   WP_000264041.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 86II/2C     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2152640..2163275
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSV60_RS10255 (OSV60_10255) - 2152696..2153676 (-) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  OSV60_RS10260 (OSV60_10260) kdsB 2153688..2154449 (-) 762 WP_000680702.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  OSV60_RS10265 (OSV60_10265) lpxK 2154459..2155469 (-) 1011 WP_098713930.1 tetraacyldisaccharide 4'-kinase -
  OSV60_RS10270 (OSV60_10270) msbA 2155472..2157199 (-) 1728 WP_098713929.1 lipid A export permease/ATP-binding protein MsbA -
  OSV60_RS10275 (OSV60_10275) - 2157196..2157624 (-) 429 WP_000669683.1 ExbD/TolR family protein -
  OSV60_RS10280 (OSV60_10280) exbB 2157640..2158275 (-) 636 WP_000264041.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  OSV60_RS10285 (OSV60_10285) - 2158325..2159212 (-) 888 WP_000023429.1 ParB/RepB/Spo0J family partition protein -
  OSV60_RS10290 (OSV60_10290) - 2159209..2159991 (-) 783 WP_000057212.1 ParA family protein -
  OSV60_RS10295 (OSV60_10295) rsmG 2160013..2160645 (-) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  OSV60_RS10300 (OSV60_10300) murU 2160733..2161422 (-) 690 WP_000646466.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  OSV60_RS10305 (OSV60_10305) - 2161422..2162435 (-) 1014 WP_001096100.1 aminoglycoside phosphotransferase family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23224.13 Da        Isoelectric Point: 6.2379

>NTDB_id=689181 OSV60_RS10280 WP_000264041.1 2157640..2158275(-) (exbB) [Acinetobacter baumannii strain 86II/2C]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDTNAQSTALGNILKAGFEHQ
EYGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=689181 OSV60_RS10280 WP_000264041.1 2157640..2158275(-) (exbB) [Acinetobacter baumannii strain 86II/2C]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAGCAGGATACTAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAATATGGCGAACAATTTGCGCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGACCTTAAGTGCTATAGCACCTCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTGATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393