Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   M5C55_RS18670 Genome accession   NZ_CP097359
Coordinates   3767959..3768396 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain H208     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3762959..3773396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5C55_RS18640 (M5C55_18640) - 3763813..3765015 (+) 1203 WP_032872800.1 GTP-binding protein -
  M5C55_RS18645 (M5C55_18645) - 3765080..3766216 (+) 1137 WP_032872802.1 zinc-dependent alcohol dehydrogenase -
  M5C55_RS18650 (M5C55_18650) - 3766231..3766665 (+) 435 WP_021494203.1 RDD family protein -
  M5C55_RS18655 (M5C55_18655) - 3766738..3767061 (+) 324 WP_032872805.1 YckD family protein -
  M5C55_RS18660 (M5C55_18660) - 3767281..3767499 (+) 219 Protein_3630 family 1 glycosylhydrolase -
  M5C55_RS18665 (M5C55_18665) nin/comJ 3767540..3767938 (-) 399 WP_032872809.1 competence protein ComJ Regulator
  M5C55_RS18670 (M5C55_18670) nucA/comI 3767959..3768396 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  M5C55_RS18675 (M5C55_18675) hxlB 3768753..3769310 (-) 558 WP_032872811.1 6-phospho-3-hexuloisomerase -
  M5C55_RS18680 (M5C55_18680) hxlA 3769307..3769942 (-) 636 WP_014416875.1 3-hexulose-6-phosphate synthase -
  M5C55_RS18685 (M5C55_18685) - 3770174..3770536 (+) 363 WP_007409352.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=689075 M5C55_RS18670 WP_003156588.1 3767959..3768396(-) (nucA/comI) [Bacillus velezensis strain H208]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=689075 M5C55_RS18670 WP_003156588.1 3767959..3768396(-) (nucA/comI) [Bacillus velezensis strain H208]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAAACCGTTCAGAAGAGTGATTACGACAAGGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGGCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAACGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCATGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATTAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641