Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   M5C55_RS17100 Genome accession   NZ_CP097359
Coordinates   3474474..3474764 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain H208     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3469474..3479764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5C55_RS17060 (M5C55_17060) darA 3469491..3469820 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  M5C55_RS17065 (M5C55_17065) - 3469833..3470273 (+) 441 WP_004264730.1 DUF327 family protein -
  M5C55_RS17070 (M5C55_17070) holB 3470285..3471274 (+) 990 WP_032872173.1 DNA polymerase III subunit delta' -
  M5C55_RS17075 (M5C55_17075) ricT 3471277..3472104 (+) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  M5C55_RS17080 (M5C55_17080) yabA 3472119..3472478 (+) 360 WP_004264720.1 replication initiation-control protein YabA -
  M5C55_RS17085 (M5C55_17085) - 3472539..3473282 (+) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  M5C55_RS17090 (M5C55_17090) - 3473269..3473568 (+) 300 WP_007409921.1 GIY-YIG nuclease family protein -
  M5C55_RS17095 (M5C55_17095) rsmI 3473543..3474424 (+) 882 WP_032872176.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  M5C55_RS17100 (M5C55_17100) abrB 3474474..3474764 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  M5C55_RS17105 (M5C55_17105) metG 3475248..3477239 (+) 1992 WP_022552471.1 methionine--tRNA ligase -
  M5C55_RS17110 (M5C55_17110) - 3477316..3478083 (+) 768 WP_032872179.1 TatD family hydrolase -
  M5C55_RS17115 (M5C55_17115) - 3478218..3479543 (+) 1326 WP_087920785.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=689070 M5C55_RS17100 WP_169510469.1 3474474..3474764(-) (abrB) [Bacillus velezensis strain H208]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=689070 M5C55_RS17100 WP_169510469.1 3474474..3474764(-) (abrB) [Bacillus velezensis strain H208]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTAGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979