Detailed information NTG0689064

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: M5C55_RS15085
• Genome accession: NZ_CP097359
• Coordinates: 3080906..3082051 (+)
• Length: 381 a.a.
• NCBI ID: WP_074534220.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain H208
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3075906..3087051

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M5C55_RS15065 (M5C55_15065)	-	3076803..3077231 (-)	429	WP_032869448.1	DUF1934 domain-containing protein	-
M5C55_RS15070 (M5C55_15070)	-	3077385..3077897 (+)	513	Protein_2959	bacteriocin biosynthesis protein AlbG	-
M5C55_RS15075 (M5C55_15075)	-	3077904..3079280 (-)	1377	WP_032875890.1	YncE family protein	-
M5C55_RS15080 (M5C55_15080)	-	3079320..3080675 (-)	1356	WP_032875887.1	YncE family protein	-
M5C55_RS15085 (M5C55_15085)	rapF	3080906..3082051 (+)	1146	WP_074534220.1	Rap family tetratricopeptide repeat protein	Regulator
M5C55_RS15090 (M5C55_15090)	-	3082035..3082154 (+)	120	WP_017418707.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
M5C55_RS15095 (M5C55_15095)	speB	3082277..3083149 (-)	873	WP_032875884.1	agmatinase	-
M5C55_RS15100 (M5C55_15100)	speE	3083208..3084038 (-)	831	WP_003151052.1	spermidine synthase	-
M5C55_RS15105 (M5C55_15105)	-	3084238..3086310 (+)	2073	WP_032875881.1	transglycosylase domain-containing protein	-
M5C55_RS15110 (M5C55_15110)	-	3086335..3086768 (-)	434	Protein_2967	hypothetical protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45737.21 Da
• Isoelectric Point: 5.0614

>NTDB_id=689064 M5C55_RS15085 WP_074534220.1 3080906..3082051(+) (rapF) [Bacillus velezensis strain H208]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAESKLTYVKDHIEKAEFYFKMSEVYYYMKQTYVS
MDYARQAYLIYKDAEKYNIRLTQCHSLFGANYLDVKQYDHAISHFQKAYTMAELEQQPQLMGRTLFNIALCHNNQNNKVE
AIPHLKEAIAVFEKAQMSHSLPQPYFLLTQIYFKLKNIDNAYDYHKKGISICKEIDDIIYEEKFKFLEYLYMPDPRDTLI
NDCLHFLENKLMYADIEELALDVAKYYYTQEEYKKASVYFLKVEEARQQIEGGVNLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=689064 M5C55_RS15085 WP_074534220.1 3080906..3082051(+) (rapF) [Bacillus velezensis strain H208]
GTGGCGAGTGTTTTATCATCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGTCTGGAAGATGATCAGGATCTTCATCTATACTATT
CTCTCATGGAATTCCGTCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGTCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAAAGCAAACTGACGTACG
TTAAAGATCATATAGAAAAAGCTGAATTTTACTTTAAAATGTCAGAAGTCTATTATTATATGAAACAAACTTATGTATCG
ATGGATTATGCGCGGCAGGCTTATTTAATTTATAAAGATGCAGAAAAATATAATATTAGATTAACCCAGTGCCATTCTTT
ATTTGGGGCTAATTATCTTGATGTAAAGCAATACGATCACGCGATTTCCCACTTTCAAAAGGCATATACGATGGCTGAAT
TGGAGCAGCAGCCGCAATTAATGGGGAGGACACTTTTTAACATCGCTTTATGCCATAATAATCAAAACAATAAAGTCGAG
GCTATTCCCCATTTAAAAGAAGCCATAGCTGTTTTTGAAAAAGCTCAAATGAGTCATTCACTTCCGCAGCCCTACTTCTT
ACTTACACAGATTTATTTTAAGTTAAAAAATATAGATAACGCGTACGATTATCATAAAAAAGGTATCTCAATATGTAAGG
AAATAGATGATATAATTTACGAGGAAAAATTTAAATTTTTAGAATACTTGTATATGCCGGATCCAAGAGATACATTAATA
AACGATTGTCTGCATTTTCTTGAAAATAAATTGATGTATGCTGATATTGAGGAATTAGCCCTTGATGTAGCTAAATATTA
TTACACACAAGAAGAATATAAAAAAGCTTCTGTCTACTTTTTAAAGGTTGAAGAAGCCAGACAGCAGATCGAAGGAGGAG
TGAATTTATATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

• Tetratricopeptide repeat (TPR_12) (188-254)

• Tetratricopeptide repeat (TPR_8) (265-293)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	70.079	100	0.701
rapC	Bacillus subtilis subsp. subtilis str. 168	54.211	99.738	0.541