Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   OSH17_RS02980 Genome accession   NZ_CP113073
Coordinates   619639..620154 (-) Length   171 a.a.
NCBI ID   WP_000477151.1    Uniprot ID   V5VA61
Organism   Acinetobacter baumannii strain A118 DeltaH0N27_10820::kan H0N27_10830-K176N     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 614639..625154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSH17_RS02955 (OSH17_02955) - 615185..616828 (+) 1644 WP_114199033.1 nitrite/sulfite reductase -
  OSH17_RS02960 (OSH17_02960) - 616821..617306 (+) 486 WP_000935245.1 DUF934 domain-containing protein -
  OSH17_RS02965 (OSH17_02965) - 617389..617742 (+) 354 WP_000457785.1 SMR family transporter -
  OSH17_RS02970 (OSH17_02970) - 617785..618228 (-) 444 WP_001176580.1 VOC family protein -
  OSH17_RS02975 (OSH17_02975) - 618355..619530 (-) 1176 WP_000129970.1 thiolase family protein -
  OSH17_RS02980 (OSH17_02980) fimT 619639..620154 (-) 516 WP_000477151.1 GspH/FimT family pseudopilin Machinery gene
  OSH17_RS02985 (OSH17_02985) omp38 620536..621597 (+) 1062 WP_005127972.1 outer membrane protein Omp38 -
  OSH17_RS02990 (OSH17_02990) - 621722..621880 (-) 159 WP_000692859.1 hypothetical protein -
  OSH17_RS02995 (OSH17_02995) - 621884..623089 (-) 1206 WP_000512701.1 RtcB family protein -
  OSH17_RS03000 (OSH17_03000) - 623367..624827 (-) 1461 WP_000004974.1 amino acid permease -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19606.86 Da        Isoelectric Point: 8.8196

>NTDB_id=689004 OSH17_RS02980 WP_000477151.1 619639..620154(-) (fimT) [Acinetobacter baumannii strain A118 DeltaH0N27_10820::kan H0N27_10830-K176N]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC

Nucleotide


Download         Length: 516 bp        

>NTDB_id=689004 OSH17_RS02980 WP_000477151.1 619639..620154(-) (fimT) [Acinetobacter baumannii strain A118 DeltaH0N27_10820::kan H0N27_10830-K176N]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGCATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAACATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGTCATGTACGCTTAGAAGAGCTTAAAAATTGTTAG

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(50-149)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V5VA61

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Acinetobacter baylyi ADP1

43.976

97.076

0.427