Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   M5598_RS17375 Genome accession   NZ_CP097356
Coordinates   341717..342814 (-) Length   365 a.a.
NCBI ID   WP_005463467.1    Uniprot ID   Q87GU4
Organism   Vibrio parahaemolyticus strain 16-VB00198     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 336717..347814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5598_RS17360 (M5598_17330) - 337381..338436 (-) 1056 WP_025623626.1 HlyD family secretion protein -
  M5598_RS17365 (M5598_17335) slyA 338474..338929 (-) 456 WP_017447361.1 transcriptional regulator SlyA -
  M5598_RS17370 (M5598_17340) luxQ 339141..341717 (-) 2577 WP_100088667.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  M5598_RS17375 (M5598_17345) luxP 341717..342814 (-) 1098 WP_005463467.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  M5598_RS17380 (M5598_17350) - 343165..343485 (-) 321 WP_005463466.1 GIY-YIG nuclease family protein -
  M5598_RS17385 (M5598_17355) - 343482..344132 (-) 651 WP_025525180.1 YceH family protein -
  M5598_RS17390 (M5598_17360) - 344304..344519 (-) 216 WP_005477197.1 hypothetical protein -
  M5598_RS17395 (M5598_17365) - 344846..345160 (+) 315 WP_005453573.1 DUF496 family protein -
  M5598_RS17400 (M5598_17370) - 345283..346620 (+) 1338 WP_228086479.1 MATE family efflux transporter -
  M5598_RS17405 (M5598_17375) - 346694..347671 (-) 978 WP_005477354.1 Gfo/Idh/MocA family protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41339.67 Da        Isoelectric Point: 5.0568

>NTDB_id=689000 M5598_RS17375 WP_005463467.1 341717..342814(-) (luxP) [Vibrio parahaemolyticus strain 16-VB00198]
MNKALVLSLISIAGMSPASQASQVLNGYWAYQEFLNEFPEQKHLTDALAAAVRDDPVPIAPEKRHPLKISVVYPGQQISD
YWIRNIDAFEKRLDKLNIDYQINQVFTRPNADIKQQSLSLMEALKSNSDYLIFTLDTTRHRKFVEHVLDSTKTKLILQNI
TTPVREWETRQPFMYVGFDHAEGSRELAVEFGKQFPKNTHYSVLYFSEGYISDIRGNTFIHQVNQDSQFELQSAYYTKAT
KQSGYEAAKASLKKYPDVEFIYACSTDVALGAVEALSELGREDVMINGWGGGSAELDAILKGELDITVMRMNDDTGIAMA
EAIKWDLEGKPVPTVYSGDFEVVTKSDSPERIEALRKRAFRYSDN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=689000 M5598_RS17375 WP_005463467.1 341717..342814(-) (luxP) [Vibrio parahaemolyticus strain 16-VB00198]
ATGAATAAAGCGTTAGTATTGTCCCTGATTTCAATTGCCGGCATGTCTCCGGCTTCACAAGCCTCTCAGGTTCTTAACGG
CTACTGGGCGTATCAAGAATTCTTAAATGAATTCCCAGAACAGAAACACTTAACGGATGCTCTGGCTGCGGCCGTGAGAG
ACGATCCTGTACCTATTGCCCCTGAAAAAAGACACCCATTAAAAATCTCTGTTGTTTATCCAGGGCAGCAGATTTCTGAT
TACTGGATAAGAAACATCGACGCGTTTGAGAAGCGCTTAGATAAACTCAATATTGATTACCAAATCAATCAAGTGTTTAC
GCGACCGAACGCCGATATCAAACAACAAAGCCTTTCTTTGATGGAAGCACTAAAAAGCAATTCCGACTACTTAATTTTTA
CACTCGATACGACCCGACATCGTAAGTTTGTCGAACATGTTTTAGATTCCACCAAAACCAAACTTATCTTGCAAAATATC
ACGACGCCAGTCCGTGAATGGGAAACTCGACAGCCTTTTATGTACGTCGGTTTCGATCACGCTGAAGGCAGTCGCGAACT
CGCTGTGGAGTTTGGTAAGCAGTTTCCGAAAAATACCCATTACAGCGTTTTGTACTTCTCTGAAGGCTACATTAGCGATA
TCCGTGGTAACACATTCATTCACCAAGTGAACCAAGACAGTCAGTTTGAACTACAATCTGCTTACTATACAAAAGCGACA
AAACAGTCCGGGTATGAAGCAGCAAAAGCCAGCTTGAAAAAGTACCCAGATGTCGAGTTCATTTATGCTTGTTCTACCGA
CGTTGCGTTAGGTGCCGTCGAAGCACTGTCTGAACTTGGCCGTGAAGACGTAATGATCAATGGCTGGGGTGGTGGTTCTG
CTGAGCTAGACGCTATCTTAAAAGGGGAGTTAGATATCACCGTCATGCGTATGAATGATGATACTGGCATTGCGATGGCA
GAGGCGATCAAATGGGATTTGGAAGGTAAACCTGTACCAACGGTGTACTCTGGGGACTTCGAAGTTGTGACCAAATCAGA
CTCCCCTGAGCGAATTGAAGCTCTCAGAAAACGTGCATTTAGATACTCAGACAATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87GU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.56

99.726

0.644