Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   M5598_RS02920 Genome accession   NZ_CP097355
Coordinates   598079..598597 (+) Length   172 a.a.
NCBI ID   WP_005462534.1    Uniprot ID   Q87LS4
Organism   Vibrio parahaemolyticus strain 16-VB00198     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 593079..603597
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5598_RS02910 (M5598_02910) gshA 595814..597382 (+) 1569 WP_031816760.1 glutamate--cysteine ligase -
  M5598_RS02915 (M5598_02915) - 597407..598012 (+) 606 WP_068864661.1 hypothetical protein -
  M5598_RS02920 (M5598_02920) luxS 598079..598597 (+) 519 WP_005462534.1 S-ribosylhomocysteine lyase Regulator
  M5598_RS02925 (M5598_02925) - 598659..599939 (-) 1281 WP_005462557.1 HlyC/CorC family transporter -
  M5598_RS02930 (M5598_02930) - 600065..600859 (-) 795 WP_005462565.1 inner membrane protein YpjD -
  M5598_RS02935 (M5598_02935) ffh 601072..602454 (+) 1383 WP_005462555.1 signal recognition particle protein -
  M5598_RS02940 (M5598_02940) rpsP 602664..602912 (+) 249 WP_005379962.1 30S ribosomal protein S16 -
  M5598_RS02945 (M5598_02945) rimM 602941..603489 (+) 549 WP_005462552.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19033.73 Da        Isoelectric Point: 4.7134

>NTDB_id=688976 M5598_RS02920 WP_005462534.1 598079..598597(+) (luxS) [Vibrio parahaemolyticus strain 16-VB00198]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLASMEDVLKVESQNKIPELNEYQCGTAAMHSLEEAQQIAKNILAAGVSVNKNDELA
LPESMLKELRVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=688976 M5598_RS02920 WP_005462534.1 598079..598597(+) (luxS) [Vibrio parahaemolyticus strain 16-VB00198]
ATGCCTTTACTCGATAGCTTCACCGTAGACCACACTCGCATGAATGCACCAGCAGTGCGTGTCGCGAAAACCATGCAAAC
TCCAAAAGGAGATACCATTACGGTTTTCGACTTACGCTTCACTGCGCCTAACAAAGACATTCTTTCAGAGAAAGGCATTC
ATACACTAGAGCACTTGTACGCAGGTTTCATGCGCAATCACCTAAATGGTGACAGTGTGGAAATCATTGATATCTCACCG
ATGGGATGTCGCACTGGTTTTTACATGAGTCTCATTGGTACGCCTTCTGAACAGCAAGTCGCAGACGCATGGCTCGCTTC
TATGGAAGATGTGCTAAAAGTGGAAAGCCAGAACAAAATCCCTGAGCTAAATGAGTACCAGTGTGGTACAGCAGCGATGC
ATTCTTTAGAAGAAGCACAGCAAATTGCCAAGAACATTCTCGCCGCAGGTGTGTCTGTTAATAAAAACGACGAGTTGGCT
TTGCCAGAATCAATGCTAAAAGAGCTGCGCGTAGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LS4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.889

99.419

0.884