Detailed information NTG0688973

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: M5598_RS02785
• Genome accession: NZ_CP097355
• Coordinates: 575360..576349 (+)
• Length: 329 a.a.
• NCBI ID: WP_264400149.1
• Uniprot ID: A0AA46Z278
• Organism: Vibrio parahaemolyticus strain 16-VB00198
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 570360..581349

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M5598_RS02750 (M5598_02750)	ftsB	570368..570649 (+)	282	WP_005455577.1	cell division protein FtsB	-
M5598_RS02755 (M5598_02755)	ispD	570651..571355 (+)	705	WP_005478544.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
M5598_RS02760 (M5598_02760)	ispF	571373..571849 (+)	477	WP_025795581.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
M5598_RS02765 (M5598_02765)	truD	571896..572939 (+)	1044	WP_020835387.1	tRNA pseudouridine(13) synthase TruD	-
M5598_RS02770 (M5598_02770)	surE	572939..573715 (+)	777	WP_020841269.1	5'/3'-nucleotidase SurE	-
M5598_RS02775 (M5598_02775)	-	573715..574341 (+)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
M5598_RS02780 (M5598_02780)	-	574356..575279 (+)	924	WP_005455560.1	peptidoglycan DD-metalloendopeptidase family protein	-
M5598_RS02785 (M5598_02785)	rpoS	575360..576349 (+)	990	WP_264400149.1	RNA polymerase sigma factor RpoS	Regulator
M5598_RS02790 (M5598_02790)	mutS	576429..578990 (-)	2562	WP_176296335.1	DNA mismatch repair protein MutS	-
M5598_RS02795 (M5598_02795)	pncC	579075..579557 (+)	483	WP_069518705.1	nicotinamide-nucleotide amidase	-
M5598_RS02800 (M5598_02800)	recA	579758..580801 (+)	1044	WP_005478550.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37501.32 Da
• Isoelectric Point: 4.6433

>NTDB_id=688973 M5598_RS02785 WP_264400149.1 575360..576349(+) (rpoS) [Vibrio parahaemolyticus strain 16-VB00198]
MSISNTVSKVEEFEYDNASETTIDNELGKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLNAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=688973 M5598_RS02785 WP_264400149.1 575360..576349(+) (rpoS) [Vibrio parahaemolyticus strain 16-VB00198]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGGAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTAATGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGCGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATCTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGTTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACGGCAGAAGAAATTGCTGCTCAACTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAACAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTACTTGCACGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CTCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATTCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTCGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.383	100	0.854