Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   OSH16_RS09655 Genome accession   NZ_CP113072
Coordinates   2065631..2066266 (-) Length   211 a.a.
NCBI ID   WP_000264033.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain A118 DeltaH0N27_10820-30::kan     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2060631..2071266
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSH16_RS09630 (OSH16_09630) - 2060687..2061667 (-) 981 WP_004747384.1 DNA polymerase III, delta' subunit -
  OSH16_RS09635 (OSH16_09635) kdsB 2061679..2062440 (-) 762 WP_000680696.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  OSH16_RS09640 (OSH16_09640) lpxK 2062450..2063460 (-) 1011 WP_168726287.1 tetraacyldisaccharide 4'-kinase -
  OSH16_RS09645 (OSH16_09645) msbA 2063463..2065190 (-) 1728 WP_001070729.1 lipid A export permease/ATP-binding protein MsbA -
  OSH16_RS09650 (OSH16_09650) - 2065187..2065615 (-) 429 WP_000669684.1 biopolymer transporter ExbD -
  OSH16_RS09655 (OSH16_09655) exbB 2065631..2066266 (-) 636 WP_000264033.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  OSH16_RS09660 (OSH16_09660) - 2066316..2067203 (-) 888 WP_000023429.1 ParB/RepB/Spo0J family partition protein -
  OSH16_RS09665 (OSH16_09665) - 2067200..2067982 (-) 783 WP_017816455.1 ParA family protein -
  OSH16_RS09670 (OSH16_09670) rsmG 2068004..2068636 (-) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  OSH16_RS09675 (OSH16_09675) murU 2068724..2069413 (-) 690 WP_168726288.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  OSH16_RS09680 (OSH16_09680) - 2069413..2070426 (-) 1014 WP_168726289.1 phosphotransferase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23223.15 Da        Isoelectric Point: 6.4861

>NTDB_id=688951 OSH16_RS09655 WP_000264033.1 2065631..2066266(-) (exbB) [Acinetobacter baumannii strain A118 DeltaH0N27_10820-30::kan]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVIINLEQDNNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=688951 OSH16_RS09655 WP_000264033.1 2065631..2066266(-) (exbB) [Acinetobacter baumannii strain A118 DeltaH0N27_10820-30::kan]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAATAAATTTGGAACAGGATAATAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCTCGAGCACAAATGGAAGCCATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGACCTTAAGTGCTATAGCGCCTCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

42.932

90.521

0.389