Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   Vir3643_RS07445 Genome accession   NZ_CP097347
Coordinates   1410530..1412341 (+) Length   603 a.a.
NCBI ID   WP_373895698.1    Uniprot ID   -
Organism   Virgibacillus sp. CBA3643     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1405530..1417341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Vir3643_RS07425 (Vir3643_07390) - 1406368..1406958 (+) 591 WP_373895695.1 GNAT family N-acetyltransferase -
  Vir3643_RS07430 (Vir3643_07395) spxA 1407288..1407683 (+) 396 WP_235794104.1 transcriptional regulator SpxA -
  Vir3643_RS07435 (Vir3643_07400) mecA 1408022..1408705 (+) 684 WP_373895696.1 adaptor protein MecA -
  Vir3643_RS07440 (Vir3643_07405) - 1409229..1410416 (+) 1188 WP_373895697.1 competence protein CoiA -
  Vir3643_RS07445 (Vir3643_07410) pepF 1410530..1412341 (+) 1812 WP_373895698.1 oligoendopeptidase F Regulator
  Vir3643_RS07450 (Vir3643_07415) - 1412636..1412848 (-) 213 WP_373895699.1 hypothetical protein -
  Vir3643_RS07455 (Vir3643_07420) - 1413256..1414149 (-) 894 WP_373895700.1 ClpXP adapter SpxH family protein -
  Vir3643_RS07460 (Vir3643_07425) - 1414167..1414553 (-) 387 WP_373895701.1 globin -
  Vir3643_RS07465 (Vir3643_07430) - 1414635..1415201 (-) 567 WP_373895702.1 CYTH domain-containing protein -
  Vir3643_RS07470 (Vir3643_07435) - 1415337..1415945 (+) 609 WP_373895703.1 GTP pyrophosphokinase family protein -
  Vir3643_RS07475 (Vir3643_07440) - 1415983..1416792 (+) 810 WP_373895704.1 NAD kinase -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 69611.91 Da        Isoelectric Point: 4.4419

>NTDB_id=688843 Vir3643_RS07445 WP_373895698.1 1410530..1412341(+) (pepF) [Virgibacillus sp. CBA3643]
MAKTSKELPKRSELPEESTWDLEAIFATDEDWEEELKKLKADIPEIEKYQGKLSESAQNLYDLFQLQDELSQRLGKLFTY
AHMRYDQDTTNSFYQALNTKAENVLTMASSSMSFIVPEILEMDEATIKGFLEEKKELQAYQKTLDEINRQRPHVLSKREE
VLLAEASDPMSSASQTFGMLNNADLTFPSIMNDDGEEVDLTQGRFIGFLESQNRDVRREAFKAMYDTYGEFINTFASTLS
GNLKTNNFNAKIRNYASAREAALDDNHIPEQVYDNLVEAVNEKLPLLHRYAALRKKVLELDELHMYDMYTPLVKDVDMKI
PYEKAQQYVLEGLSPLGDEYVDILKQGYENRWIDVEENKGKRSGAYSSGAYGTNPYILLNWQDSLNDTFTLAHELGHSVH
SYYSQKTQDFRYGNYSIFVAEVASTTNEALLNDYMLKNLDDEKQKLYLLNHYLEGFRGTVFRQTMFAEFEHDIHKRQQDG
EALTAEKLTEIYYDLNKKYFGDEVVSDEEIGLEWARIPHFYMNYYVYQYATGYSAATSLANQILSGKDGAVDRYINFLKA
GSSEYPIEILKKAGVDMTSKQPILDAMDVFEEKLNELEELLLK

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=688843 Vir3643_RS07445 WP_373895698.1 1410530..1412341(+) (pepF) [Virgibacillus sp. CBA3643]
TTGGCTAAAACGTCAAAGGAATTACCAAAACGCAGTGAATTACCTGAAGAATCAACATGGGACTTAGAAGCTATTTTTGC
TACAGATGAAGATTGGGAAGAGGAGTTAAAGAAACTGAAGGCAGATATTCCGGAAATCGAGAAATATCAAGGAAAGCTGT
CTGAATCCGCTCAGAACTTGTATGATCTGTTCCAGCTGCAGGACGAACTTTCACAAAGACTTGGGAAGCTGTTTACATAT
GCGCATATGCGGTATGATCAGGATACAACAAATTCATTTTACCAGGCATTGAATACAAAAGCTGAGAATGTATTGACAAT
GGCATCCAGTTCGATGAGCTTTATTGTACCGGAAATACTGGAAATGGATGAGGCGACAATAAAAGGGTTCCTCGAAGAAA
AGAAAGAATTACAAGCATATCAAAAGACCTTGGATGAAATTAATCGTCAGCGTCCCCATGTATTAAGCAAGCGTGAAGAG
GTTTTACTGGCTGAAGCATCCGATCCGATGTCAAGCGCATCGCAAACGTTCGGTATGCTCAATAATGCGGATCTAACCTT
TCCTTCCATTATGAATGATGATGGGGAAGAGGTCGACTTGACGCAGGGCAGATTTATCGGATTTCTGGAATCACAAAACC
GTGATGTTCGCAGAGAAGCGTTCAAGGCGATGTATGATACGTATGGAGAATTTATTAATACATTTGCTTCCACACTTAGT
GGTAATTTGAAGACGAATAATTTTAACGCGAAAATCCGAAACTATGCTTCAGCCAGGGAAGCGGCACTTGATGATAATCA
TATCCCGGAACAAGTGTATGATAATCTGGTTGAAGCAGTTAATGAAAAGCTGCCGCTGCTTCATCGTTATGCAGCATTGC
GGAAAAAGGTGTTAGAGCTAGATGAGTTGCATATGTATGACATGTATACACCACTTGTCAAAGACGTTGATATGAAAATA
CCTTATGAAAAGGCGCAGCAATATGTGCTTGAAGGTTTATCTCCACTGGGTGATGAATATGTCGACATTTTGAAACAGGG
ATATGAAAATCGCTGGATTGATGTTGAAGAAAACAAAGGGAAACGCAGTGGCGCCTATTCTTCGGGAGCATATGGCACAA
ACCCATACATTTTGTTGAACTGGCAGGACAGTCTGAATGATACATTCACACTGGCACATGAGCTTGGGCATTCCGTGCAC
AGCTACTATTCCCAAAAAACACAGGACTTCCGTTATGGTAATTATTCCATTTTCGTAGCAGAAGTGGCATCAACAACCAA
TGAGGCCTTGTTGAATGATTATATGTTAAAGAACCTTGATGATGAGAAACAAAAACTGTATTTGCTTAATCATTATCTGG
AGGGTTTTCGTGGCACGGTATTCCGTCAAACGATGTTTGCTGAATTTGAGCATGATATTCATAAACGACAGCAGGATGGC
GAAGCGCTTACTGCGGAAAAGCTAACAGAAATTTATTATGACTTAAATAAAAAATACTTTGGTGATGAGGTCGTCTCAGA
CGAGGAAATTGGCTTGGAATGGGCAAGAATTCCACATTTCTATATGAACTATTATGTGTATCAATATGCAACAGGGTATT
CCGCTGCAACTTCACTTGCGAATCAAATACTTTCAGGCAAGGATGGCGCAGTAGATCGTTATATTAACTTCCTGAAAGCA
GGAAGTAGTGAATATCCAATTGAAATACTGAAGAAAGCCGGCGTGGATATGACATCCAAACAGCCAATTTTAGACGCCAT
GGATGTCTTTGAGGAAAAGTTAAACGAGTTGGAAGAATTACTGTTAAAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(118-187)

Peptidase family M3 (Peptidase_M3)

(209-588)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

48.904

98.342

0.481