Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   Vir3643_RS03535 Genome accession   NZ_CP097347
Coordinates   629779..630732 (+) Length   317 a.a.
NCBI ID   WP_373895003.1    Uniprot ID   -
Organism   Virgibacillus sp. CBA3643     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 624779..635732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Vir3643_RS03510 (Vir3643_03480) - 625202..625747 (-) 546 WP_373894998.1 HD domain-containing protein -
  Vir3643_RS03515 (Vir3643_03485) fni 625914..626969 (+) 1056 WP_373894999.1 type 2 isopentenyl-diphosphate Delta-isomerase -
  Vir3643_RS03520 (Vir3643_03490) - 627193..627651 (+) 459 WP_373895000.1 DUF2188 domain-containing protein -
  Vir3643_RS03525 (Vir3643_03495) - 627762..628628 (+) 867 WP_373895001.1 MBL fold metallo-hydrolase -
  Vir3643_RS03530 (Vir3643_03500) - 628763..629485 (+) 723 WP_373895002.1 DsbA family protein -
  Vir3643_RS03535 (Vir3643_03505) ceuB 629779..630732 (+) 954 WP_373895003.1 ABC transporter permease Machinery gene
  Vir3643_RS03540 (Vir3643_03510) - 630722..631672 (+) 951 WP_373895004.1 iron chelate uptake ABC transporter family permease subunit -
  Vir3643_RS03545 (Vir3643_03515) - 631666..632421 (+) 756 WP_373895005.1 ABC transporter ATP-binding protein -
  Vir3643_RS03550 (Vir3643_03520) - 632785..633738 (+) 954 WP_373895006.1 siderophore ABC transporter substrate-binding protein -
  Vir3643_RS03555 (Vir3643_03525) - 634297..635022 (+) 726 WP_373895007.1 SurA N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34960.19 Da        Isoelectric Point: 9.7131

>NTDB_id=688835 Vir3643_RS03535 WP_373895003.1 629779..630732(+) (ceuB) [Virgibacillus sp. CBA3643]
MKLRYLFIALIILSVISVFLGVSDITPLDLFSLTEGQAQVLLVSRIPRLLSILIAGMSMSICGLIMQQLSRNKFVSPTTA
GTLDSARLGILVSMMIFTAANQFQQMLVAFAFALLGTFIFMKILEKIKFKDAIFIPLIGLMFGNIISSVSTFIAYQNDLI
QNMSSWMQGDFSMIMSGNYELMFVSIPILILAYFYANKFTIAGMGEDFSKNLGLNYRQVVNLGLTITALVTASVVLSVGV
IPFLGLIIPNIVTIYQGDHLKKSLIHTALLGAVFVLMCDVIGRIIIYPYEIPISLTVGVIGSGIFIYLLLRRKKYGL

Nucleotide


Download         Length: 954 bp        

>NTDB_id=688835 Vir3643_RS03535 WP_373895003.1 629779..630732(+) (ceuB) [Virgibacillus sp. CBA3643]
ATGAAATTAAGATACTTATTTATCGCGCTCATTATTCTTTCAGTTATATCTGTCTTTCTTGGTGTTTCTGACATTACACC
ATTAGATCTGTTCAGCTTAACGGAAGGTCAGGCGCAAGTCTTATTGGTTAGCAGAATTCCCAGGCTACTAAGTATTTTGA
TAGCGGGAATGAGTATGAGTATTTGTGGTTTAATTATGCAGCAGTTAAGCAGAAATAAATTTGTTTCTCCTACAACTGCA
GGAACATTGGATTCAGCAAGACTTGGCATTCTTGTTTCCATGATGATCTTTACAGCGGCTAACCAATTTCAGCAAATGCT
CGTAGCTTTTGCGTTTGCACTTTTAGGGACCTTCATATTCATGAAGATATTAGAAAAAATCAAATTTAAAGATGCGATAT
TCATCCCGCTGATCGGATTAATGTTTGGTAATATAATTAGTTCTGTATCAACTTTTATCGCCTATCAGAATGATCTCATA
CAAAATATGTCATCCTGGATGCAAGGCGATTTCTCGATGATCATGAGTGGAAATTATGAATTGATGTTTGTCAGTATCCC
AATTCTCATTCTGGCGTATTTTTATGCAAATAAATTTACGATTGCAGGAATGGGGGAGGATTTTTCCAAAAACTTAGGGT
TAAATTATCGGCAGGTTGTAAATCTTGGTTTGACTATCACGGCACTGGTAACGGCTTCCGTGGTACTATCGGTTGGGGTG
ATTCCATTCCTTGGTCTAATCATTCCAAATATCGTTACGATTTACCAGGGTGATCACTTAAAGAAAAGTTTAATACATAC
TGCATTGCTAGGTGCCGTATTTGTCTTAATGTGTGATGTCATCGGCAGAATTATCATCTATCCATATGAGATTCCAATCA
GTTTAACCGTTGGGGTTATAGGTAGTGGGATATTCATCTACCTATTGTTAAGGAGAAAGAAATATGGATTATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

55.063

99.685

0.549