Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   Vir3643_RS01100 Genome accession   NZ_CP097347
Coordinates   176916..178289 (+) Length   457 a.a.
NCBI ID   WP_373894572.1    Uniprot ID   -
Organism   Virgibacillus sp. CBA3643     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 171916..183289
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Vir3643_RS01080 (Vir3643_01070) - 172203..172670 (+) 468 WP_373894568.1 CtsR family transcriptional regulator -
  Vir3643_RS01085 (Vir3643_01075) - 172683..173231 (+) 549 WP_373894569.1 UvrB/UvrC motif-containing protein -
  Vir3643_RS01090 (Vir3643_01080) - 173228..174292 (+) 1065 WP_373894570.1 protein arginine kinase -
  Vir3643_RS01095 (Vir3643_01085) clpC 174310..176742 (+) 2433 WP_373894571.1 ATP-dependent protease ATP-binding subunit ClpC -
  Vir3643_RS01100 (Vir3643_01090) radA 176916..178289 (+) 1374 WP_373894572.1 DNA repair protein RadA Machinery gene
  Vir3643_RS01105 (Vir3643_01095) - 178535..179635 (+) 1101 WP_373894573.1 PIN/TRAM domain-containing protein -
  Vir3643_RS01110 (Vir3643_01100) gltX 179756..181225 (+) 1470 WP_373894574.1 glutamate--tRNA ligase -
  Vir3643_RS01115 (Vir3643_01105) cysE 181552..182220 (+) 669 WP_373894575.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49877.28 Da        Isoelectric Point: 6.2757

>NTDB_id=688834 Vir3643_RS01100 WP_373894572.1 176916..178289(+) (radA) [Virgibacillus sp. CBA3643]
MAKRKTKYVCQECGYESAKWLGKCPGCNNWNTFVEEIEASRTGNQHTVSGGVKTASKPEKITAIQSQEEPRITTSMMELN
RVLGGGVVPGSLVLVGGDPGIGKSTLLLQISSQLADKQLPVLYISGEESTRQTKLRADRLGVTSDLLYVLSETNLFDIAK
HINEIQPSFVVIDSIQTIFREEVSSAPGSVSQVRESTSELMKIAKSSGIPIFIVGHVTKEGAIAGPRMLEHMVDAVLYFE
GERHHMYRILRGVKNRFGSTNEMGIFEMKEEGLKEVMNPSEIFLEERSQGAAGSTVVASMEGTRPVLVEIQALISPSSFG
NPRRMATGVDSSRVPLLMAVLEKRVGLMLQNQDAYIKVAGGVKLDEPAIDLAIAVSIASSFRDQSTLPEDIFIGEVGLTG
EIRRVSRIEQRVQESAKLGFKRVICPMKNLDGWTPPENIQVVGVNTVQEALDTGLAR

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=688834 Vir3643_RS01100 WP_373894572.1 176916..178289(+) (radA) [Virgibacillus sp. CBA3643]
TTGGCGAAACGGAAAACGAAATATGTATGTCAGGAATGTGGATATGAATCAGCAAAGTGGTTGGGCAAATGTCCGGGTTG
CAACAACTGGAATACATTTGTCGAGGAAATCGAAGCATCACGTACCGGCAATCAGCATACAGTAAGTGGGGGCGTAAAAA
CCGCTAGTAAGCCTGAAAAAATCACCGCCATCCAGTCACAGGAAGAACCTCGAATAACCACGTCGATGATGGAATTAAAT
CGTGTGCTCGGGGGAGGAGTCGTTCCAGGTTCTCTAGTCCTCGTCGGTGGCGATCCGGGAATTGGGAAATCAACATTGCT
ACTGCAAATATCCTCGCAACTCGCGGATAAGCAGCTCCCGGTGCTGTATATATCAGGAGAGGAATCTACTCGCCAAACCA
AGCTTCGCGCCGATCGGTTAGGCGTTACTTCGGATTTGCTGTATGTTTTATCTGAAACAAACTTATTTGATATTGCCAAA
CATATTAACGAAATTCAGCCATCTTTTGTGGTGATTGACTCCATTCAAACTATTTTTCGCGAGGAAGTCAGCAGTGCACC
GGGGAGTGTATCCCAAGTCCGTGAGTCTACGAGTGAATTAATGAAAATAGCAAAATCTAGTGGTATTCCGATATTTATTG
TTGGACATGTAACGAAAGAGGGAGCTATTGCCGGGCCGAGAATGCTCGAACATATGGTGGATGCTGTACTTTATTTTGAG
GGTGAAAGACACCATATGTACCGCATTTTACGTGGCGTGAAGAACCGCTTTGGCAGCACCAATGAAATGGGCATATTTGA
AATGAAAGAAGAAGGCTTGAAGGAAGTTATGAACCCTTCTGAGATATTTTTAGAAGAGCGTTCGCAAGGGGCTGCAGGTT
CTACTGTAGTTGCCTCAATGGAGGGAACGAGGCCAGTACTTGTGGAAATACAGGCACTCATTTCTCCCTCGAGTTTTGGG
AACCCGCGACGGATGGCGACAGGGGTTGATAGTAGCAGAGTTCCGTTATTAATGGCGGTACTTGAAAAACGCGTAGGCTT
AATGCTGCAGAATCAGGATGCATATATTAAGGTAGCTGGTGGTGTAAAACTTGATGAGCCGGCTATTGATCTGGCAATTG
CTGTTAGTATTGCCTCAAGCTTCCGTGATCAATCGACACTTCCGGAGGATATTTTTATTGGGGAGGTAGGATTAACAGGT
GAGATAAGGCGCGTATCGCGTATCGAACAACGTGTGCAGGAATCGGCTAAACTTGGGTTTAAGCGTGTGATTTGTCCGAT
GAAGAATTTGGATGGCTGGACACCCCCGGAAAATATTCAAGTTGTTGGTGTGAATACTGTTCAGGAGGCACTAGATACCG
GTCTGGCAAGATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(71-221)

Subunit ChlI of Mg-chelatase (ChlI)

(356-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

72.368

99.781

0.722
  radA Streptococcus mitis NCTC 12261

62.061

99.781

0.619
  radA Streptococcus mitis SK321

62.061

99.781

0.619
  radA Streptococcus pneumoniae Rx1

61.842

99.781

0.617
  radA Streptococcus pneumoniae D39

61.842

99.781

0.617
  radA Streptococcus pneumoniae R6

61.842

99.781

0.617
  radA Streptococcus pneumoniae TIGR4

61.842

99.781

0.617