Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   M5K26_RS08190 Genome accession   NZ_CP097342
Coordinates   1717766..1718392 (+) Length   208 a.a.
NCBI ID   WP_017384804.1    Uniprot ID   A0AA37AJW2
Organism   Enterobacter hormaechei subsp. xiangfangensis strain va18651     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1712766..1723392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5K26_RS08170 (M5K26_08170) - 1713165..1714925 (-) 1761 WP_045911584.1 Lon protease family protein -
  M5K26_RS08175 (M5K26_08175) matP 1715112..1715564 (+) 453 WP_006809347.1 macrodomain Ter protein MatP -
  M5K26_RS08180 (M5K26_08180) ompA 1715630..1716682 (-) 1053 WP_108376575.1 porin OmpA -
  M5K26_RS08185 (M5K26_08185) sulA 1717039..1717548 (-) 510 WP_026094322.1 SOS-induced cell division inhibitor SulA -
  M5K26_RS08190 (M5K26_08190) sxy/tfoX 1717766..1718392 (+) 627 WP_017384804.1 TfoX/Sxy family DNA transformation protein Regulator
  M5K26_RS08195 (M5K26_08195) yccS 1718349..1720511 (-) 2163 WP_045911585.1 YccS family putative transporter -
  M5K26_RS08200 (M5K26_08200) - 1720530..1720976 (-) 447 WP_003858149.1 YccF domain-containing protein -
  M5K26_RS08205 (M5K26_08205) helD 1721099..1723153 (+) 2055 WP_045911586.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24018.63 Da        Isoelectric Point: 9.4592

>NTDB_id=688816 M5K26_RS08190 WP_017384804.1 1717766..1718392(+) (sxy/tfoX) [Enterobacter hormaechei subsp. xiangfangensis strain va18651]
MKKISYDRIYQSQEYLSPLGEIHHRALFGGYTLAVDEAVFAMVSDGELYLRACEQSAKYCVKNASSFLTLMKRGRPVLLN
YYRVDEGLWQNREKLLQLSSFALDAARKERYQRHQRNRLKDLPNLTFQIEVLLMEAGITNEETLRQLGAKTSWLKMRSKN
KALSIRVLFALEGAIEGLHEAALPADIRRELMEWFNALPESQGHHSAR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=688816 M5K26_RS08190 WP_017384804.1 1717766..1718392(+) (sxy/tfoX) [Enterobacter hormaechei subsp. xiangfangensis strain va18651]
ATGAAAAAGATATCTTATGATCGGATTTATCAATCTCAGGAATACCTCTCTCCGCTGGGCGAAATTCATCATCGCGCCCT
GTTTGGCGGTTATACCCTGGCCGTGGATGAAGCGGTGTTCGCGATGGTGTCTGACGGCGAGCTGTACCTTCGCGCCTGTG
AGCAAAGTGCAAAATACTGTGTAAAAAACGCCTCCTCTTTTCTGACCCTGATGAAACGAGGACGGCCAGTGCTGCTTAAT
TACTACCGTGTGGATGAAGGTCTGTGGCAAAACAGGGAAAAGCTGCTTCAGCTCTCCTCGTTTGCGCTCGATGCCGCCAG
GAAAGAGCGCTACCAGCGCCATCAGCGTAACCGGCTTAAGGATCTGCCGAACCTGACCTTTCAGATTGAGGTCCTGCTTA
TGGAGGCGGGCATTACCAATGAAGAGACGCTACGACAGTTGGGGGCGAAGACGAGCTGGCTGAAAATGCGCTCTAAGAAT
AAAGCGCTGAGTATCCGGGTATTGTTCGCGCTTGAAGGCGCCATCGAAGGGTTACATGAAGCGGCACTCCCGGCGGATAT
TCGCCGGGAGCTTATGGAGTGGTTTAATGCGCTGCCTGAGTCGCAGGGCCATCATTCCGCCAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.911

97.115

0.572