Detailed information NTG0688806

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: M6D76_RS15285
• Genome accession: NZ_CP097341
• Coordinates: 3331547..3332629 (-)
• Length: 360 a.a.
• NCBI ID: WP_371478820.1
• Uniprot ID: -
• Organism: Alcaligenes faecalis strain DY-8
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3326547..3337629

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M6D76_RS15260 (M6D76_15245)	nusB	3326645..3327160 (-)	516	WP_042488795.1	transcription antitermination factor NusB	-
M6D76_RS15265 (M6D76_15250)	ribH	3327114..3327632 (-)	519	WP_009454781.1	6,7-dimethyl-8-ribityllumazine synthase	-
M6D76_RS15270 (M6D76_15255)	ribBA	3327647..3328813 (-)	1167	WP_009454780.1	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	-
M6D76_RS15275 (M6D76_15260)	-	3328929..3329756 (+)	828	WP_042488803.1	IclR family transcriptional regulator	-
M6D76_RS15280 (M6D76_15265)	-	3329876..3331405 (+)	1530	WP_022983223.1	CYTH and CHAD domain-containing protein	-
M6D76_RS15285 (M6D76_15270)	pilA	3331547..3332629 (-)	1083	WP_371478820.1	signal recognition particle-docking protein FtsY	Machinery gene
M6D76_RS15290 (M6D76_15275)	rsmD	3333093..3333722 (+)	630	WP_226349433.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
M6D76_RS15295 (M6D76_15280)	coaD	3333743..3334249 (+)	507	WP_009454773.1	pantetheine-phosphate adenylyltransferase	-
M6D76_RS15300 (M6D76_15285)	-	3334335..3334592 (+)	258	WP_226349434.1	YfhL family 4Fe-4S dicluster ferredoxin	-
M6D76_RS15305 (M6D76_15290)	-	3334656..3335048 (-)	393	WP_115634358.1	MOSC N-terminal beta barrel domain-containing protein	-

Sequence

Protein

• Length: 360 a.a.
• Molecular weight: 37939.64 Da
• Isoelectric Point: 4.8364

>NTDB_id=688806 M6D76_RS15285 WP_371478820.1 3331547..3332629(-) (pilA) [Alcaligenes faecalis strain DY-8]
MPEPEVQPIPEPVPQPEPEIQPTPEPEPEIVPVPAPQPDPAPAPTPEPEAAAPVVKTSWMARLKQGLSRTGQSLSSLFVG
AKVDETLFEELEDALLMADAGVEATEKLITALRARVRKEKISDAAQVKQALCDILTDHLKPLEKSFPLESSKPLVVMIAG
VNGAGKTTSIGKLAHTFQEQGAKVLLAAGDTFRAAAREQLIEWGTRNNVSVIAQDGGDPAAVAFDAVHAGRARDMGVVMV
DTAGRLPTQLHLMEELKKIKRVIGKADGQAPHEILLVVDGNTGQNAISQIRAFDAALGLTGLVVTKLDGTAKGGTLAAVA
ACAQGVRPIPVYWIGVGEGMQDLQAFVAREFASALLGMNA

Nucleotide

• Length: 1083 bp

>NTDB_id=688806 M6D76_RS15285 WP_371478820.1 3331547..3332629(-) (pilA) [Alcaligenes faecalis strain DY-8]
GTGCCTGAACCCGAGGTGCAGCCGATTCCCGAGCCGGTACCGCAACCGGAACCCGAGATACAGCCGACTCCTGAACCGGA
GCCAGAGATTGTTCCAGTTCCTGCGCCACAGCCTGACCCAGCACCTGCCCCGACGCCAGAGCCAGAAGCCGCCGCACCTG
TGGTGAAAACTTCCTGGATGGCACGCTTGAAACAGGGCTTGTCGCGTACCGGTCAGAGCTTGAGCAGCCTGTTCGTCGGT
GCCAAGGTTGATGAAACGCTGTTCGAGGAACTGGAAGACGCCTTGCTGATGGCAGACGCGGGTGTTGAGGCTACCGAGAA
ACTGATTACCGCCTTGCGTGCTCGTGTTCGTAAGGAAAAAATCAGCGATGCAGCCCAAGTCAAACAAGCCCTGTGCGACA
TCCTGACCGATCATTTGAAGCCCCTGGAGAAATCCTTTCCTCTGGAATCGAGCAAACCACTGGTAGTCATGATTGCCGGG
GTGAATGGTGCAGGTAAAACCACGTCTATCGGTAAGTTGGCCCACACCTTCCAGGAGCAGGGCGCAAAAGTCTTGTTGGC
CGCCGGTGATACCTTCCGTGCTGCTGCTCGTGAACAGCTGATTGAGTGGGGCACCCGCAATAACGTCAGTGTTATTGCTC
AGGACGGTGGTGACCCCGCCGCGGTGGCGTTTGATGCCGTGCATGCAGGGCGTGCCCGCGATATGGGCGTGGTCATGGTG
GATACCGCCGGCCGCTTGCCAACCCAGCTTCACCTGATGGAAGAGCTCAAGAAGATCAAGCGCGTCATCGGCAAGGCCGA
TGGTCAGGCTCCTCATGAAATTCTCTTGGTTGTGGACGGCAATACCGGCCAGAACGCCATTTCGCAGATCCGTGCCTTTG
ATGCAGCCTTGGGTCTGACTGGCCTGGTGGTTACCAAGCTGGACGGCACGGCCAAAGGCGGTACGCTGGCTGCCGTTGCT
GCCTGTGCGCAAGGCGTACGTCCTATTCCGGTTTACTGGATTGGCGTGGGCGAGGGCATGCAGGATCTGCAGGCCTTTGT
GGCCCGTGAGTTTGCGTCGGCCTTGTTGGGCATGAACGCTTAA

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (71-135)

• SRP54-type protein, GTPase domain (SRP54) (154-357)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	53.933	98.889	0.533