Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   OSV61_RS10015 Genome accession   NZ_CP113069
Coordinates   2121156..2121791 (-) Length   211 a.a.
NCBI ID   WP_000264037.1    Uniprot ID   A0ABX6CFI5
Organism   Acinetobacter baumannii strain 29D2     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2116156..2126791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSV61_RS09990 (OSV61_09990) - 2116212..2117192 (-) 981 WP_001075407.1 DNA polymerase III subunit delta' -
  OSV61_RS09995 (OSV61_09995) kdsB 2117204..2117965 (-) 762 WP_000680695.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  OSV61_RS10000 (OSV61_10000) lpxK 2117975..2118985 (-) 1011 WP_065718575.1 tetraacyldisaccharide 4'-kinase -
  OSV61_RS10005 (OSV61_10005) msbA 2118988..2120715 (-) 1728 WP_001070729.1 lipid A export permease/ATP-binding protein MsbA -
  OSV61_RS10010 (OSV61_10010) - 2120712..2121140 (-) 429 WP_000669684.1 biopolymer transporter ExbD -
  OSV61_RS10015 (OSV61_10015) exbB 2121156..2121791 (-) 636 WP_000264037.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  OSV61_RS10020 (OSV61_10020) - 2121841..2122728 (-) 888 WP_000023429.1 ParB/RepB/Spo0J family partition protein -
  OSV61_RS10025 (OSV61_10025) - 2122725..2123507 (-) 783 WP_000057212.1 ParA family protein -
  OSV61_RS10030 (OSV61_10030) rsmG 2123529..2124161 (-) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  OSV61_RS10035 (OSV61_10035) murU 2124249..2124938 (-) 690 WP_000646459.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  OSV61_RS10040 (OSV61_10040) - 2124938..2125951 (-) 1014 WP_065718574.1 phosphotransferase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23198.10 Da        Isoelectric Point: 6.4861

>NTDB_id=688716 OSV61_RS10015 WP_000264037.1 2121156..2121791(-) (exbB) [Acinetobacter baumannii strain 29D2]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDTNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=688716 OSV61_RS10015 WP_000264037.1 2121156..2121791(-) (exbB) [Acinetobacter baumannii strain 29D2]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAACAGGATACTAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCTCGAGCGCAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAGAAAAATATTAA
CTTCTTAGGGACCTTAAGTGCTATAGCGCCTTTATTAGGACTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCGCTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCTACGCTATTTCATGCCTCATTGTTTTATAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393