Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   M5D45_RS05180 Genome accession   NZ_CP097330
Coordinates   1117546..1120113 (+) Length   855 a.a.
NCBI ID   WP_250025157.1    Uniprot ID   A0AAE9I0G3
Organism   Cupriavidus campinensis strain G5     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1112546..1125113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5D45_RS05160 (M5D45_05160) - 1113274..1114434 (-) 1161 WP_144196070.1 hypothetical protein -
  M5D45_RS05165 (M5D45_05165) - 1114536..1115786 (+) 1251 WP_144196068.1 lipoprotein-releasing ABC transporter permease subunit -
  M5D45_RS05170 (M5D45_05170) lolD 1115815..1116528 (+) 714 WP_244845015.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  M5D45_RS05175 (M5D45_05175) - 1116576..1117421 (+) 846 WP_250025156.1 TatD family hydrolase -
  M5D45_RS05180 (M5D45_05180) comA 1117546..1120113 (+) 2568 WP_250025157.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  M5D45_RS05185 (M5D45_05185) - 1120154..1121101 (-) 948 WP_246118899.1 MurR/RpiR family transcriptional regulator -
  M5D45_RS05190 (M5D45_05190) edd 1121358..1123244 (+) 1887 WP_211942918.1 phosphogluconate dehydratase -
  M5D45_RS05195 (M5D45_05195) - 1123433..1123951 (+) 519 WP_250025341.1 gluconokinase -

Sequence

Protein


Download         Length: 855 a.a.        Molecular weight: 91220.55 Da        Isoelectric Point: 11.6647

>NTDB_id=688620 M5D45_RS05180 WP_250025157.1 1117546..1120113(+) (comA) [Cupriavidus campinensis strain G5]
MRAVLMAFVAGCWWLQQQAGLPSAWRWWWQVLAGAIGVVALTYVARCRHGRMVGEGSASVLRMWMWRGVVVALACGAGFG
WAAWRADSRMADWLDPALAGRDIELHGMVAGLPDVASQGTRFLFAVTGLHEARLPPRLLLTWRDPPEALQPGERYRLTVR
LRRPRGLANPHGFDYAYWLLGEGIGATGYVRAGAPSEEAGPLPWAIRVQAWRAGLRDRLRAALPPDARFGAVLVALVIGD
QRGIATEDWEVFRRTGIAHLVSISGLHITMISGAAGALVLALWRRSFGLGRRLRRPLPLIWPAQQAALVVAVLTALGYGL
IAGMQVPAMRTVSMLAVAALALWSGRAPPASVVLAWAAGVAVMIDPWAVMSPGFWLSFGAVAAIFLAAREPVRHARAEGR
WQRARAVVAAALAGAARTQWAVTVGLVPLTLLLFGQVSVVSCLANAVAIPVVSLLVTPLALAGAVLPAILAGPLLAIAHT
AMAWLSGALSWLAAPAWAIWEAAQPGPVWMVLASAGVVLVLMPRKRAADLRAATPSGGPRPARRPMRPSVRAPPRWCGAL
LMMPMLLAGRTPVPAGEFRVTALDVGQGTAVLVETKAHALLYDTGPGYPSGASAGGQVIVPWLRAMGVRRLDTLMVSHED
ADHAGGVREVLAAVPVGRRLTGAPLDHGLLIEAAAIEGSALGSAVPWQPCEAGAAWTWNGVRFTILHPSASDLGSARLAS
NARSCVLRVATAHRSLLLTGDIGVREELGLVATVPPEDLRADVLLVPHHGSGTSSGAAFLRAVQPEAAVFQLGFGNRYRH
PRADVWRRYGREGIARYRTDETGAVSIVTAGSLLKISSYRQRERRYWRDAPAAPR

Nucleotide


Download         Length: 2568 bp        

>NTDB_id=688620 M5D45_RS05180 WP_250025157.1 1117546..1120113(+) (comA) [Cupriavidus campinensis strain G5]
ATGCGAGCTGTGCTGATGGCGTTCGTCGCGGGTTGCTGGTGGCTCCAGCAGCAGGCCGGATTGCCGTCGGCGTGGCGGTG
GTGGTGGCAGGTGCTGGCGGGGGCCATCGGCGTGGTGGCGTTGACGTATGTCGCGCGTTGTCGTCATGGGCGCATGGTGG
GCGAGGGAAGTGCGTCCGTTCTCAGGATGTGGATGTGGCGCGGGGTCGTGGTGGCGCTTGCGTGCGGGGCGGGGTTCGGG
TGGGCGGCATGGCGCGCCGACAGCAGGATGGCAGACTGGCTGGACCCAGCCCTGGCGGGGCGCGACATCGAGCTACACGG
CATGGTCGCCGGGCTGCCCGATGTGGCAAGCCAGGGCACGCGCTTTCTGTTCGCGGTAACCGGGTTGCATGAGGCGCGCC
TGCCACCACGGCTCCTGCTGACCTGGCGGGATCCGCCGGAGGCGCTGCAGCCGGGGGAGCGCTATCGGCTGACGGTCAGG
CTGCGCAGGCCACGCGGGCTGGCCAATCCACATGGATTCGACTACGCGTACTGGCTGCTGGGCGAGGGTATCGGTGCAAC
TGGCTATGTGCGCGCCGGCGCGCCGTCGGAGGAGGCGGGGCCGCTGCCATGGGCAATTCGCGTACAGGCGTGGCGGGCGG
GCTTGCGCGACCGGCTTCGCGCGGCGCTGCCGCCGGACGCGCGCTTTGGGGCTGTGCTCGTGGCGCTGGTGATTGGCGAC
CAGCGCGGCATCGCCACCGAGGACTGGGAGGTGTTCCGACGGACCGGCATCGCGCATCTGGTCAGCATTTCGGGCCTGCA
CATCACGATGATCTCGGGCGCGGCTGGCGCCCTGGTGCTGGCGTTGTGGCGGCGGTCGTTCGGGCTGGGGCGGCGGCTGC
GCCGGCCCTTGCCGCTGATCTGGCCGGCGCAGCAGGCGGCGCTCGTGGTGGCGGTACTGACTGCCTTGGGCTACGGACTG
ATCGCCGGGATGCAGGTGCCGGCGATGCGTACCGTGAGCATGCTGGCCGTGGCGGCGCTGGCATTGTGGAGTGGCCGGGC
GCCACCGGCATCGGTCGTGCTCGCGTGGGCGGCAGGTGTGGCGGTGATGATCGACCCATGGGCCGTGATGTCGCCCGGCT
TCTGGCTGTCCTTCGGCGCCGTGGCGGCGATCTTCCTTGCCGCGCGCGAGCCGGTTCGGCACGCAAGGGCGGAGGGGCGG
TGGCAGAGGGCGAGGGCGGTCGTGGCGGCGGCGCTGGCGGGCGCCGCACGCACGCAGTGGGCGGTGACGGTTGGTCTCGT
GCCGCTGACGCTACTGCTGTTCGGACAGGTGTCTGTAGTGTCTTGCCTTGCCAACGCTGTCGCCATTCCGGTGGTGAGCC
TGCTTGTGACACCGTTGGCGCTGGCCGGCGCCGTGCTGCCGGCGATCTTGGCCGGGCCGTTGCTGGCGATTGCGCATACA
GCGATGGCTTGGCTGTCCGGGGCGCTCTCCTGGCTTGCGGCGCCAGCGTGGGCCATCTGGGAGGCGGCGCAGCCGGGGCC
CGTCTGGATGGTGCTGGCGTCTGCCGGGGTGGTGCTCGTGCTGATGCCGCGCAAACGGGCGGCGGATCTCCGGGCAGCAA
CGCCCTCAGGCGGCCCGCGGCCCGCCCGGCGGCCCATGCGTCCCTCGGTGCGTGCGCCGCCACGCTGGTGTGGGGCGTTG
CTGATGATGCCGATGCTGCTGGCGGGCCGGACGCCTGTGCCGGCCGGGGAGTTCCGTGTCACGGCACTCGATGTTGGGCA
GGGCACGGCGGTACTGGTCGAGACCAAGGCCCATGCACTGCTGTATGACACGGGGCCGGGATACCCGTCAGGGGCAAGTG
CGGGTGGGCAGGTGATCGTGCCATGGCTGCGGGCGATGGGCGTGCGGCGGCTCGATACGCTGATGGTCAGTCACGAGGAT
GCGGATCATGCCGGGGGCGTGCGCGAGGTGCTGGCGGCAGTGCCGGTGGGGCGCCGGCTGACGGGGGCGCCGCTCGATCA
CGGGCTCCTGATTGAGGCAGCGGCGATCGAAGGTAGCGCGTTGGGCAGCGCAGTGCCGTGGCAGCCGTGTGAGGCTGGCG
CGGCGTGGACGTGGAATGGCGTGCGCTTCACTATCCTGCATCCGTCGGCGTCGGACCTCGGCAGCGCGCGGTTGGCAAGC
AATGCGCGCAGTTGTGTGCTGCGGGTGGCCACGGCGCACCGCAGCCTCTTGCTGACCGGGGATATCGGCGTGCGCGAGGA
ACTGGGTTTGGTTGCCACGGTGCCGCCTGAAGACCTGCGTGCCGATGTCCTGCTGGTGCCGCACCACGGCAGCGGCACGT
CTTCAGGCGCGGCGTTCCTGCGCGCGGTGCAGCCGGAGGCGGCGGTGTTCCAGCTGGGATTCGGCAATCGCTACCGGCAT
CCGCGCGCCGATGTCTGGCGGCGGTATGGGCGTGAGGGCATCGCGCGGTATCGGACGGATGAAACGGGCGCGGTGTCGAT
CGTCACGGCGGGGTCGCTCCTGAAGATATCGTCATACCGGCAGCGAGAGCGGCGGTACTGGCGCGATGCACCGGCCGCGC
CGCGCTAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(584-789)

Competence protein (Competence)

(236-526)

Domain of unknown function (DUF4131) (DUF4131)

(25-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Ralstonia pseudosolanacearum GMI1000

47.166

100

0.487