Detailed information NTG0068862

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: BSFP_RS08340
• Genome accession: NZ_AP018111
• Coordinates: 1821054..1822208 (+)
• Length: 384 a.a.
• NCBI ID: WP_096471816.1
• Uniprot ID: A0A1Y1BFW1
• Organism: Burkholderia stabilis strain FERMP-21014
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	1822323..1823348	1821054..1822208	flank	115

Gene organization within MGE regions

Location: 1821054..1823348

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BSFP_RS08340 (BSFP_016500)	pilA	1821054..1822208 (+)	1155	WP_096471816.1	signal recognition particle-docking protein FtsY	Machinery gene
BSFP_RS08345 (BSFP_016510)	-	1822323..1823348 (+)	1026	WP_096472991.1	IS110 family transposase	-

Sequence

Protein

• Length: 384 a.a.
• Molecular weight: 40988.90 Da
• Isoelectric Point: 4.8057

>NTDB_id=68862 BSFP_RS08340 WP_096471816.1 1821054..1822208(+) (pilA) [Burkholderia stabilis strain FERMP-21014]
MFSFFKRFKKTQEPDPAESQSADASQTDEPSDAPAVDAPPAAEVPQAPVQPAAPAVVMTVTPTNDGRDEVVETVEIVPPP
LQDASAKKSWLARLKTGLAKTGSSITGVFVNTKIDEDLYEELETALLMSDAGVDATEYLLDALREKVRTGRLTDPQQVKA
ALHDLLVELLKPLEKSLMLGRAQPLVMMITGVNGAGKTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAVWGERNNV
TVVQQESGDPAAVIFDAVSAARARKIDVMMADTAGRLPTQLHLMEELKKVKRVISKAHDGSPHEVLLVIDANTGQNALTQ
VKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFSAVEFADALLG

Nucleotide

• Length: 1155 bp

>NTDB_id=68862 BSFP_RS08340 WP_096471816.1 1821054..1822208(+) (pilA) [Burkholderia stabilis strain FERMP-21014]
ATGTTCAGCTTCTTCAAACGATTCAAGAAAACGCAGGAGCCCGATCCCGCGGAATCGCAATCGGCCGATGCGTCGCAAAC
GGACGAGCCGTCCGATGCGCCCGCGGTCGACGCTCCGCCCGCGGCCGAAGTGCCGCAGGCGCCCGTGCAACCGGCCGCGC
CGGCCGTCGTGATGACGGTCACGCCGACCAACGACGGCCGCGACGAAGTCGTCGAGACGGTCGAGATCGTCCCGCCGCCG
CTGCAGGACGCATCCGCGAAGAAATCGTGGCTTGCGCGCCTGAAAACAGGGCTCGCGAAAACCGGCTCCAGCATCACCGG
CGTATTCGTCAACACGAAGATCGACGAGGATCTGTACGAGGAGCTCGAAACGGCGCTGCTGATGTCCGACGCGGGCGTCG
ACGCGACCGAGTACCTGCTCGATGCGCTGCGCGAAAAGGTGCGCACGGGCCGGCTGACCGATCCGCAGCAGGTGAAGGCT
GCGCTGCACGACCTGCTCGTCGAGCTGCTGAAGCCGCTCGAGAAATCGCTGATGCTCGGCCGCGCGCAGCCGCTCGTGAT
GATGATCACCGGCGTGAACGGCGCGGGCAAGACGACCAGCATCGGCAAGCTCGCGAAGCATCTGCAGAGCTTCGACCAGT
CGGTGCTGCTGGCCGCGGGCGACACGTTCCGCGCGGCCGCGCGCGAACAGCTGGCGGTCTGGGGCGAGCGCAACAACGTG
ACGGTCGTGCAGCAGGAAAGCGGCGATCCGGCCGCGGTGATCTTCGACGCGGTCAGCGCCGCGCGCGCGCGCAAGATCGA
CGTGATGATGGCCGACACGGCCGGCCGCCTGCCGACGCAGCTCCACCTGATGGAAGAGCTGAAGAAGGTGAAGCGCGTGA
TCTCGAAGGCGCACGACGGCTCGCCGCACGAAGTGCTGCTGGTGATCGACGCGAACACCGGCCAGAACGCGCTCACGCAG
GTGAAGGCATTCGACGACGCGCTCGGCCTCACGGGCCTCATCGTCACGAAGCTCGACGGCACCGCGAAGGGCGGGATTCT
CGCCGCGATCGCGCGGCAACGCCCGGTGCCCGTCTACTTCATCGGCGTCGGCGAGAAGGTCGAGGACCTGCAGCCGTTCA
GCGCCGTGGAATTCGCGGACGCGCTGCTCGGCTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (102-164)

• SRP54-type protein, GTPase domain (SRP54) (185-384)

3D structure

• AlphaFold DB: A0A1Y1BFW1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	53.846	100	0.583