Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   M4D78_RS18785 Genome accession   NZ_CP097329
Coordinates   3867213..3868646 (+) Length   477 a.a.
NCBI ID   WP_286392593.1    Uniprot ID   -
Organism   Pseudanabaena mucicola str. Chao 1806     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3862213..3873646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M4D78_RS18760 - 3862834..3863676 (+) 843 WP_286392589.1 ABC transporter permease -
  M4D78_RS18765 - 3863710..3865101 (-) 1392 WP_286392591.1 cobyrinate a,c-diamide synthase -
  M4D78_RS18770 - 3865931..3866104 (-) 174 WP_286396902.1 hypothetical protein -
  M4D78_RS18775 - 3866141..3866194 (-) 54 Protein_3718 hypothetical protein -
  M4D78_RS18780 - 3866773..3866925 (-) 153 WP_286392592.1 hypothetical protein -
  M4D78_RS18785 radA 3867213..3868646 (+) 1434 WP_286392593.1 DNA repair protein RadA Machinery gene
  M4D78_RS18790 smc 3868695..3872291 (-) 3597 WP_286392595.1 chromosome segregation protein SMC -
  M4D78_RS18795 rplT 3872582..3872935 (-) 354 WP_286392597.1 50S ribosomal protein L20 -
  M4D78_RS18800 rpmI 3873018..3873215 (-) 198 WP_286392598.1 50S ribosomal protein L35 -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 51626.56 Da        Isoelectric Point: 7.5725

>NTDB_id=688613 M4D78_RS18785 WP_286392593.1 3867213..3868646(+) (radA) [Pseudanabaena mucicola str. Chao 1806]
MAKTKSRYVCNNCGEDFPQMYGKCPACASWGTLQEEIVPVMSTNTNAIATFSHLSTAKSKGKIQARESLTLSQITDNDQA
RSPSGYEELDRVLGGGIVAGSLVLIGGEPGIGKSTLLLGMAQKLMSRYPTLYVCAEESAQQVKLRSQRLGILEENSDALY
LLAETDLETVLRELQSLRPKVAVIDSIQALYFSNLNAAPGSVSQVRECTAALMRVAKRENISLFIVGHVTKEGSIAGPKV
LEHMVDTVLYFEGDRFATHRLLRSVKNRFGATQEIGVFEMIDRGLREVANPSELFLGNRDEAVSGTATIVACEGTRPIVV
ELQALVSPTSYSSPRRTTTGIETNRFLQILAVLEKRIGIPLSKLDAYVAAAGGLNVAEPAVDLGVAIAVAASFRDRMVDP
RTVMIGEVGLGGQVRPVSQLDMRLKEAAKLGFKRAIIPSMQVMQNYGMEIVTVTKVLDAIIAALPRTKFEASKPSED

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=688613 M4D78_RS18785 WP_286392593.1 3867213..3868646(+) (radA) [Pseudanabaena mucicola str. Chao 1806]
ATGGCAAAAACAAAATCTCGATATGTATGCAATAACTGCGGTGAAGACTTCCCACAGATGTATGGAAAATGTCCCGCTTG
CGCTAGTTGGGGAACGTTGCAAGAAGAGATAGTTCCTGTCATGTCCACAAATACCAATGCGATCGCCACATTCTCGCATC
TCAGTACAGCCAAATCTAAGGGAAAAATACAAGCTAGAGAATCTTTAACGCTTTCACAAATTACCGACAATGACCAAGCG
CGATCCCCATCTGGCTATGAAGAACTCGATCGCGTATTGGGTGGAGGCATTGTGGCTGGTTCCCTTGTGCTGATTGGTGG
TGAACCAGGGATTGGCAAAAGTACACTGTTATTGGGCATGGCGCAAAAACTGATGAGTCGCTATCCCACGCTCTATGTCT
GTGCGGAGGAGTCAGCACAACAGGTGAAACTGCGATCGCAGAGATTGGGAATTCTTGAAGAGAACTCTGATGCTCTCTAT
TTATTGGCGGAAACTGATTTAGAGACAGTCTTAAGAGAATTGCAATCTCTCCGCCCGAAAGTTGCCGTAATTGATAGTAT
TCAAGCGCTTTATTTCTCAAATTTAAATGCTGCCCCTGGTTCCGTTTCACAGGTACGAGAATGTACGGCGGCGCTGATGC
GCGTAGCTAAGCGAGAAAATATATCGCTATTTATCGTTGGTCATGTCACGAAGGAAGGCTCGATCGCAGGACCAAAGGTT
CTAGAACATATGGTGGATACAGTGCTCTATTTTGAAGGCGATCGCTTTGCTACCCACCGACTATTACGATCAGTCAAAAA
TCGCTTTGGGGCAACACAGGAGATCGGTGTATTTGAGATGATTGATCGCGGCTTGCGTGAAGTTGCCAATCCTTCGGAAT
TATTTCTCGGCAATCGAGATGAAGCGGTTTCAGGCACAGCGACAATAGTAGCTTGTGAGGGAACGCGCCCAATAGTGGTG
GAATTGCAAGCGCTCGTCAGTCCTACCAGTTATTCCTCGCCTCGCCGCACGACAACGGGCATAGAAACAAATCGCTTTCT
GCAAATTCTGGCTGTTCTGGAAAAGCGAATCGGTATTCCTCTATCAAAACTGGATGCCTACGTGGCGGCAGCAGGTGGTT
TGAATGTTGCGGAACCTGCGGTAGATTTGGGAGTAGCGATCGCTGTGGCGGCAAGTTTTCGCGATCGCATGGTCGATCCG
CGCACAGTGATGATTGGCGAAGTGGGCTTGGGTGGGCAGGTGCGTCCCGTGTCGCAATTAGATATGCGATTAAAGGAAGC
CGCAAAATTAGGTTTTAAAAGAGCGATTATTCCTAGTATGCAGGTGATGCAAAATTACGGCATGGAAATAGTAACTGTGA
CCAAGGTTTTGGATGCGATCATTGCAGCTTTGCCGCGCACCAAGTTTGAAGCTTCTAAGCCAAGTGAAGACTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(379-439)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

KaiC (ATPase)

(83-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.496

98.113

0.505
  radA Streptococcus mitis SK321

47.222

98.113

0.463
  radA Streptococcus pneumoniae Rx1

49.315

91.824

0.453
  radA Streptococcus pneumoniae D39

49.315

91.824

0.453
  radA Streptococcus pneumoniae R6

49.315

91.824

0.453
  radA Streptococcus pneumoniae TIGR4

49.315

91.824

0.453
  radA Streptococcus mitis NCTC 12261

49.315

91.824

0.453